##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551883_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 763032 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.201505310393273 28.0 25.0 31.0 16.0 33.0 2 27.504448044118725 30.0 25.0 33.0 16.0 33.0 3 27.44226061292318 30.0 25.0 33.0 16.0 34.0 4 31.593853206680716 35.0 28.0 35.0 19.0 37.0 5 33.04553937449543 35.0 32.0 35.0 28.0 37.0 6 32.754898877111316 35.0 32.0 35.0 28.0 37.0 7 33.88411233080657 35.0 33.0 37.0 30.0 37.0 8 33.92301240314954 35.0 35.0 37.0 30.0 37.0 9 36.075941769152536 39.0 35.0 39.0 30.0 39.0 10 35.17797942943415 37.0 34.0 39.0 30.0 39.0 11 35.75737321632644 37.0 35.0 39.0 31.0 39.0 12 35.767385902557166 37.0 35.0 39.0 31.0 39.0 13 35.88628786210801 37.0 35.0 39.0 31.0 39.0 14 36.811571467513815 38.0 36.0 40.0 31.0 41.0 15 36.980555206072616 39.0 36.0 40.0 32.0 41.0 16 36.55070036381174 38.0 35.0 40.0 31.0 41.0 17 36.65858836850879 38.0 35.0 40.0 31.0 41.0 18 36.42757446607744 38.0 35.0 40.0 31.0 41.0 19 36.03818319546232 38.0 34.0 40.0 30.0 41.0 20 36.3282706360939 38.0 35.0 40.0 31.0 41.0 21 36.52387973243586 38.0 35.0 40.0 31.0 41.0 22 36.88632062613364 39.0 35.0 40.0 31.0 41.0 23 37.210216609526206 39.0 35.0 40.0 32.0 41.0 24 37.29303227125468 39.0 35.0 40.0 32.0 41.0 25 36.276496922802714 38.0 35.0 40.0 30.0 41.0 26 36.550957233772635 38.0 35.0 40.0 31.0 41.0 27 36.75408239759276 39.0 35.0 40.0 31.0 41.0 28 36.730834355570934 39.0 35.0 40.0 31.0 41.0 29 36.75650562492792 39.0 35.0 40.0 31.0 41.0 30 36.39004261944453 39.0 35.0 40.0 30.0 41.0 31 36.57243601841076 39.0 35.0 40.0 31.0 41.0 32 36.479197464850756 39.0 35.0 40.0 31.0 41.0 33 36.53765372880823 39.0 35.0 40.0 31.0 41.0 34 36.56134342989547 39.0 35.0 41.0 31.0 41.0 35 36.47002484823703 39.0 35.0 41.0 30.0 41.0 36 36.31217825726837 39.0 35.0 41.0 30.0 41.0 37 36.355576175049016 39.0 35.0 41.0 30.0 41.0 38 36.21634348231791 39.0 35.0 40.0 30.0 41.0 39 36.056386888099055 39.0 35.0 40.0 30.0 41.0 40 35.95730454292874 39.0 35.0 40.0 29.0 41.0 41 35.72269708216693 38.0 35.0 40.0 28.0 41.0 42 35.90971807211231 39.0 35.0 40.0 29.0 41.0 43 35.902032942261926 39.0 35.0 40.0 30.0 41.0 44 36.012025707965066 39.0 35.0 40.0 30.0 41.0 45 36.044391323037566 39.0 35.0 40.0 30.0 41.0 46 35.855239360865596 38.0 35.0 40.0 29.0 41.0 47 35.78338261042787 38.0 35.0 40.0 29.0 41.0 48 35.801844483586535 38.0 35.0 40.0 30.0 41.0 49 35.742061931871795 38.0 35.0 40.0 29.0 41.0 50 35.59721348514872 38.0 35.0 40.0 29.0 41.0 51 34.69769419893268 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 13.0 9 35.0 10 45.0 11 38.0 12 35.0 13 69.0 14 88.0 15 114.0 16 161.0 17 271.0 18 480.0 19 976.0 20 1838.0 21 3100.0 22 4401.0 23 5444.0 24 6676.0 25 7717.0 26 8680.0 27 9496.0 28 10535.0 29 12603.0 30 16261.0 31 21846.0 32 31091.0 33 47615.0 34 62814.0 35 67460.0 36 94819.0 37 140688.0 38 160225.0 39 47397.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.398971471707604 18.007370595204396 20.07347005105946 15.520187882028539 2 31.251638201281207 28.158321014059702 22.913980016565493 17.676060768093606 3 32.15173151322618 26.232189475670747 24.977982574780615 16.63809643632246 4 28.26015160569937 22.917780643537885 29.8343975088856 18.98767024187714 5 29.14255234380734 27.15875612031999 23.019873347382546 20.678818188490126 6 24.681533670933852 37.06725274955703 23.114495853384916 15.1367177261242 7 74.15390180228351 6.126872791704673 15.009200138395245 4.710025267616561 8 73.98510154226821 10.10612923180155 10.092106228834439 5.816662997095796 9 67.58196248650123 8.275799704337434 11.658226653665901 12.484011155495445 10 41.98788517388524 23.70215141697858 18.84206691200369 15.467896497132491 11 32.82784994600488 24.931850826701897 23.341222910703614 18.899076316589607 12 27.671971817695717 21.208546954780402 28.845448159448097 22.27403306807578 13 26.847628932993633 22.77768166996928 30.87590035542415 19.498789041612934 14 20.957181350192393 29.40178131454513 27.634751884586755 22.006285450675726 15 20.324573543442476 24.791358684825802 33.31393703016387 21.57013074156785 16 22.4712725023328 24.309596452049192 29.408858344079935 23.810272701538075 17 22.053465647574413 25.965621363193154 28.046792270835297 23.934120718397132 18 22.88383711299133 25.150976630075807 27.396360834145884 24.568825422786986 19 24.731203933779973 25.922897073779342 25.58084064626385 23.765058346176833 20 26.986548401639777 25.19239035846465 27.888607555122196 19.932453684773378 21 26.290509441281625 26.967807378982794 26.9928390945596 19.748844085175982 22 23.1798928485306 23.555237526080163 29.34110233908932 23.923767286299917 23 24.46935384099225 26.139139642898336 27.39544344142841 21.99606307468101 24 23.562314555614968 25.93456106690152 27.57407290913094 22.929051468352572 25 22.854742658237136 28.74361756780843 26.06915568416528 22.332484089789155 26 21.80288637960138 25.55908533324946 28.22083477495046 24.4171935121987 27 25.606658698455636 26.08239235051741 25.688306650310867 22.622642300716088 28 21.919657366925634 27.64851277534887 29.004026043468688 21.42780381425681 29 22.989861499910884 24.800794724205538 27.66620534918588 24.5431384266977 30 22.51570052107906 28.71478522525923 26.144512943100683 22.625001310561025 31 25.954350538378467 25.225940720703722 23.827834219272585 24.991874521645226 32 25.55200830371465 26.738983424024156 25.064086434120718 22.644921838140473 33 23.960594051101396 24.68100944652387 25.12620702670399 26.232189475670747 34 22.51111355749169 24.756497761561768 27.51339393367513 25.218994747271413 35 23.04280816531941 25.38530494133929 27.99423877373426 23.57764811960704 36 23.366123570177923 26.859292926115813 27.058105033602786 22.716478470103482 37 22.585946592017113 27.23214753771795 27.751653928013504 22.430251942251438 38 23.370972645970287 25.083351681187683 25.366432862579813 26.179242810262217 39 23.5827593076044 24.11052223235723 27.55506977426897 24.751648685769403 40 22.216630495182375 23.871082733096383 29.489064678807704 24.423222092913534 41 20.091686849306452 25.372068274987157 29.761530315897627 24.774714559808764 42 21.906420700573502 24.291903878212185 29.9999213663385 23.80175405487581 43 23.430865284811123 23.7914006227786 27.776030363077826 25.00170372933245 44 23.0935268769855 24.418241961018673 27.08877216158693 25.399459000408896 45 22.643480221013014 23.661392969102213 26.64711309617421 27.048013713710567 46 24.047615303158977 26.356037492529804 25.904811331634846 23.691535872676376 47 21.74351796517053 24.67773304396146 30.27160066681345 23.30714832405456 48 22.18557019889074 24.880345778420825 27.639732016481616 25.294352006206815 49 21.654661927678003 23.809486364923096 30.730165969448205 23.805685737950704 50 21.64968179578314 23.904108870925466 29.78027133855461 24.665937994736787 51 21.526358003334067 24.891223434928026 27.137525031715576 26.444893530022334 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 242.0 1 902.0 2 1562.0 3 3772.0 4 5982.0 5 4252.5 6 2523.0 7 2542.5 8 2562.0 9 2498.0 10 2434.0 11 2350.0 12 2266.0 13 2187.0 14 2108.0 15 2163.0 16 2218.0 17 2045.5 18 1873.0 19 1879.0 20 1885.0 21 1995.0 22 2105.0 23 2351.0 24 2597.0 25 3034.0 26 4810.0 27 6149.0 28 6743.0 29 7337.0 30 8045.0 31 8753.0 32 10757.5 33 12762.0 34 14417.5 35 16073.0 36 17148.5 37 18224.0 38 19368.0 39 20512.0 40 23195.5 41 25879.0 42 30225.5 43 34572.0 44 38823.5 45 43075.0 46 66564.5 47 90054.0 48 77604.5 49 65155.0 50 63651.0 51 62147.0 52 56810.0 53 51473.0 54 48246.0 55 45019.0 56 44119.5 57 43220.0 58 42359.5 59 41499.0 60 39837.5 61 38176.0 62 34414.5 63 30653.0 64 26819.0 65 22985.0 66 19070.0 67 15155.0 68 12917.0 69 10679.0 70 8896.0 71 7113.0 72 5990.5 73 4868.0 74 4062.5 75 2790.0 76 2323.0 77 1725.0 78 1127.0 79 880.5 80 634.0 81 420.5 82 207.0 83 126.5 84 46.0 85 48.5 86 51.0 87 30.5 88 10.0 89 11.5 90 13.0 91 7.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 763032.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.53033218234333 #Duplication Level Percentage of deduplicated Percentage of total 1 75.67283186295785 20.076253665028865 2 9.25858097468676 4.912664575911276 3 3.165780534654888 2.51967627602372 4 1.582981522935236 1.6798810256793417 5 1.0222233732119284 1.3559962827933987 6 0.6846608535599702 1.0898567926315639 7 0.5760838762450611 1.0698587621171407 8 0.40740882340759693 0.8646953135216959 9 0.3984668214694066 0.9514311423503264 >10 6.264700251804513 40.73040380372233 >50 0.8940218166529009 15.06309056259816 >100 0.06279082993207871 2.970522054911419 >500 0.003986719360766902 0.7231954620066522 >1k 0.003986719360766902 2.58658062499052 >5k 9.966798401917255E-4 1.9550075496695365 >10k+ 4.983399200958628E-4 1.4508861060440585 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTC 10974 1.4382096687950179 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCG 8252 1.081474957799935 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGC 6535 0.8564516298136907 No Hit GAATGCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTT 3810 0.4993237505111188 No Hit GCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTCTGC 3305 0.4331404187504587 TruSeq Adapter, Index 23 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3128 0.4099434886086036 No Hit GAACTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTCT 2608 0.3417943153104981 TruSeq Adapter, Index 20 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCCTTTT 2025 0.26538860755512217 No Hit GAATGACTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCT 1711 0.2242369913712662 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTA 1575 0.20641336143176173 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTC 1402 0.183740655699892 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 958 0.12555174619150966 No Hit CCTGTCTCTTATACACATCTGACGCCAGCCTTTTCGTATGCCGTCTTCTGC 795 0.10418960148460353 TruSeq Adapter, Index 23 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0809926713427484 0.0 2 0.0 0.0 0.0 0.7246091907023559 0.0 3 0.0 0.0 0.0 0.8809591209805093 0.0 4 0.0 0.0 0.0 1.4296910221327546 0.0 5 0.0 0.0 0.0 3.423447509409828 0.0 6 0.0 0.0 0.0 4.370196793843508 0.0 7 0.0 0.0 0.0 4.942649849547594 0.0 8 0.0 0.0 0.0 5.608021681921597 0.0 9 0.0 0.0 0.0 5.823608970528103 0.0 10 0.0 0.0 0.0 7.386846161104645 0.0 11 0.0 0.0 0.0 8.006348357604924 0.0 12 0.0 0.0 0.0 9.441805848247517 0.0 13 0.0 0.0 0.0 9.83602260455656 0.0 14 0.0 0.0 0.0 10.015045240566582 0.0 15 0.0 0.0 0.0 10.411358894515564 0.0 16 0.0 0.0 0.0 10.787883076987598 0.0 17 0.0 0.0 0.0 11.200054519338638 0.0 18 0.0 0.0 0.0 11.67159437612053 0.0 19 0.0 0.0 0.0 12.220064165067782 0.0 20 0.0 0.0 0.0 12.545345411463739 0.0 21 0.0 0.0 0.0 12.85214774740771 0.0 22 0.0 0.0 0.0 13.224216022394867 0.0 23 0.0 0.0 0.0 13.540061229411087 0.0 24 0.0 0.0 0.0 13.816065381268414 0.0 25 0.0 0.0 0.0 14.063106134474046 0.0 26 0.0 0.0 0.0 14.401624047222136 0.0 27 0.0 0.0 0.0 14.686408957946718 0.0 28 0.0 0.0 0.0 14.946948489709476 0.0 29 0.0 0.0 0.0 15.197003533272524 0.0 30 0.0 0.0 0.0 15.482050556202099 0.0 31 0.0 0.0 0.0 15.77443672087147 0.0 32 0.0 0.0 0.0 16.057648958366098 0.0 33 0.0 0.0 0.0 16.361305947850155 0.0 34 0.0 0.0 0.0 16.665225049539206 0.0 35 0.0 0.0 0.0 16.961018672873482 0.0 36 0.0 0.0 0.0 17.240692395600707 0.0 37 0.0 0.0 0.0 17.535699682320008 0.0 38 0.0 0.0 0.0 17.825726837144444 0.0 39 0.0 0.0 0.0 18.144717390620578 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAA 20 7.031793E-4 45.000004 20 AACGGTC 20 7.031793E-4 45.000004 35 TCCCGAT 20 7.031793E-4 45.000004 41 ATGCGAG 20 7.031793E-4 45.000004 1 TTACGCG 20 7.031793E-4 45.000004 1 TCGAACC 20 7.031793E-4 45.000004 14 ATTCCGT 25 3.8895683E-5 45.0 12 ACCTAAC 25 3.8895683E-5 45.0 45 CGAATAC 50 2.1827873E-11 45.0 45 CACGTAG 25 3.8895683E-5 45.0 1 GCATCGT 45 3.8380676E-10 45.0 35 GGCGAAC 210 0.0 43.92857 32 CGAATGC 160 0.0 43.593754 45 CTTCGAA 100 0.0 42.75 42 TACGCGG 65 0.0 41.538464 2 CGGCGAA 245 0.0 41.32653 31 CCGATGA 1310 0.0 41.049618 18 CGGTCTA 55 6.002665E-11 40.909092 31 CGTTTTT 1730 0.0 40.708096 1 CGCATCG 50 1.0804797E-9 40.5 21 >>END_MODULE