SRR3551879_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551879_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	505903
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTC	8988	1.7766251633218224	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCG	8303	1.6412237128461384	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGC	8228	1.626398736516684	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4032	0.7969907274714718	No Hit
GCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGC	3142	0.6210676750286123	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATCACGCAT	2353	0.4651089240427513	No Hit
GAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	2089	0.41292500736307153	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT	1848	0.3652874167577579	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTC	1341	0.26507057677064577	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATCACGCATCGTA	1241	0.24530394166470648	No Hit
CCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGC	882	0.17434172163438447	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCC	811	0.16030741070916757	No Hit
CTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGCT	705	0.13935477749687195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGG	35	1.2101191E-7	45.000004	2
CTATGCG	20	7.029538E-4	45.0	1
CGGTTAT	20	7.029538E-4	45.0	42
CTGCCGG	20	7.029538E-4	45.0	2
CGAATAT	40	6.8012014E-9	45.0	14
CCGGTTA	20	7.029538E-4	45.0	41
ACGTAGG	20	7.029538E-4	45.0	2
TGTAACG	20	7.029538E-4	45.0	1
AGCCGTT	30	2.163084E-6	44.999996	45
ATCGTAG	30	2.163084E-6	44.999996	1
CGTTTTT	2330	0.0	42.972107	1
TACGGCT	855	0.0	42.894737	7
CGGCGAT	80	0.0	42.1875	31
TCGAATG	80	0.0	42.1875	44
TTAGCGG	70	0.0	41.785717	2
TTGTGCG	60	3.6379788E-12	41.249996	1
ACCACCG	560	0.0	40.982143	14
ACGGCTG	895	0.0	40.977654	8
CATAAGG	55	6.002665E-11	40.909092	2
CGCGAGG	50	1.0786607E-9	40.5	2