##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551879_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 505903 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.670407172916548 28.0 25.0 31.0 16.0 33.0 2 27.84321105033969 31.0 25.0 33.0 16.0 34.0 3 27.663055961320648 31.0 25.0 33.0 16.0 34.0 4 31.66974103731348 35.0 28.0 35.0 19.0 37.0 5 33.31430728815603 35.0 32.0 35.0 28.0 37.0 6 33.15131359173596 35.0 32.0 35.0 28.0 37.0 7 33.99603481299775 35.0 33.0 37.0 31.0 37.0 8 34.044986884837606 35.0 35.0 37.0 31.0 37.0 9 36.30145304534664 39.0 35.0 39.0 32.0 39.0 10 35.516587171849146 37.0 34.0 39.0 31.0 39.0 11 36.159771734897795 37.0 35.0 39.0 32.0 39.0 12 36.22501151406495 37.0 35.0 39.0 32.0 39.0 13 36.37060068827424 37.0 35.0 39.0 32.0 39.0 14 37.35182040826008 39.0 36.0 40.0 32.0 41.0 15 37.488664823098496 39.0 36.0 40.0 32.0 41.0 16 37.08613311247413 39.0 36.0 40.0 32.0 41.0 17 37.10251372298642 38.0 36.0 40.0 32.0 41.0 18 37.00085391863658 38.0 36.0 40.0 32.0 41.0 19 36.6378021083093 38.0 35.0 40.0 31.0 41.0 20 36.81744326481559 38.0 35.0 40.0 32.0 41.0 21 37.06571417840969 39.0 35.0 40.0 32.0 41.0 22 37.421266527377774 39.0 36.0 40.0 33.0 41.0 23 37.717483391084855 39.0 36.0 40.0 33.0 41.0 24 37.75546498044091 39.0 36.0 41.0 33.0 41.0 25 36.841787852612065 39.0 35.0 40.0 31.0 41.0 26 37.12813721207425 39.0 35.0 40.0 32.0 41.0 27 37.43425122997887 39.0 36.0 40.0 33.0 41.0 28 37.45178423531784 39.0 36.0 41.0 33.0 41.0 29 37.561765793047286 40.0 36.0 41.0 33.0 41.0 30 37.195855727283686 39.0 36.0 40.0 32.0 41.0 31 37.33448506927217 39.0 36.0 40.0 33.0 41.0 32 37.213691162139774 39.0 36.0 40.0 33.0 41.0 33 37.19012735642999 40.0 36.0 41.0 32.0 41.0 34 37.10094425215901 40.0 36.0 41.0 32.0 41.0 35 37.04016580253527 40.0 36.0 41.0 32.0 41.0 36 37.031098847012174 40.0 36.0 41.0 32.0 41.0 37 37.01823076755821 40.0 36.0 41.0 32.0 41.0 38 36.94640276891025 40.0 36.0 41.0 31.0 41.0 39 36.84334546345841 40.0 36.0 41.0 31.0 41.0 40 36.71082796504468 39.0 35.0 41.0 31.0 41.0 41 36.475241301198054 39.0 35.0 41.0 30.0 41.0 42 36.68918152294017 39.0 35.0 41.0 31.0 41.0 43 36.69264266074722 40.0 35.0 41.0 31.0 41.0 44 36.80445263222396 40.0 36.0 41.0 31.0 41.0 45 36.79552799647363 40.0 36.0 41.0 32.0 41.0 46 36.6396858686349 39.0 35.0 41.0 31.0 41.0 47 36.477998746795336 39.0 35.0 41.0 31.0 41.0 48 36.552764067420036 39.0 35.0 41.0 31.0 41.0 49 36.568405405779366 39.0 35.0 41.0 31.0 41.0 50 36.46543309685849 39.0 35.0 41.0 31.0 41.0 51 35.50594086218109 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 4.0 9 14.0 10 9.0 11 7.0 12 19.0 13 19.0 14 32.0 15 35.0 16 47.0 17 86.0 18 179.0 19 342.0 20 676.0 21 1261.0 22 1939.0 23 2586.0 24 3528.0 25 4824.0 26 5428.0 27 5612.0 28 5640.0 29 6278.0 30 8278.0 31 11000.0 32 15660.0 33 23610.0 34 32916.0 35 41178.0 36 62396.0 37 102366.0 38 129045.0 39 40887.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.028011298608625 18.33987938399258 21.056408046601817 17.57570127079697 2 30.691061329938744 28.662213902665133 22.96705099594191 17.679673771454212 3 28.346540740023286 27.08799908282813 27.3787662852365 17.186693891912086 4 26.204035160890527 22.855171841242296 32.92152843529293 18.01926456257425 5 28.535707437987124 26.254242414059615 25.604513118127386 19.605537029825875 6 23.04512920461037 36.17827923534749 25.986404508374132 14.790187051668008 7 71.41863163491816 5.464881607739033 17.830690863663587 5.285795893679223 8 70.92486108997178 10.588195760847436 12.421551166923303 6.065391982257468 9 64.91145535804294 8.66905315841179 13.381814300369834 13.03767718317543 10 34.54081118317148 30.960282900081637 20.998689472092476 13.50021644465441 11 27.389440268193706 24.05421592676857 29.826468710404956 18.729875094632767 12 24.69860823122219 20.719189251694495 32.68096848605365 21.901234031029666 13 23.503122140014984 22.22936017378826 35.672648709337565 18.5948689768592 14 18.984469354797266 28.363540046214393 30.674062023747634 21.977928575240707 15 17.49090240619249 26.01486846292669 36.996420262382316 19.497808868498506 16 19.569166421230946 26.66005143278455 30.73158293190592 23.039199214078586 17 19.4997855320091 26.952992965054566 32.09429475610937 21.45292674682696 18 19.026572287572915 27.207784891570125 31.798388228573458 21.9672545922835 19 20.14872416253709 27.428182873001344 30.130874891036424 22.292218073425143 20 21.846085119084094 27.447751841756222 33.67740456174405 17.028758477415632 21 21.808528512382807 29.179704409738626 31.23266713184148 17.779099946037086 22 19.02083996339219 24.04176294665183 32.75548870040304 24.181908389552937 23 19.71682318547231 27.627825887571333 32.1978719240645 20.45747900289186 24 21.21216913123662 25.463577009822043 30.556252878516236 22.7680009804251 25 18.592496980646487 31.50979535602675 28.363935378916512 21.53377228441025 26 18.491687141606196 27.861862847225655 31.345139285594275 22.301310725573874 27 21.80477285171268 27.696613777740005 29.745425506470607 20.75318786407671 28 17.30351470538819 28.05201787694479 32.51512641751482 22.129341000152202 29 19.612455352112953 27.459414156468732 30.621285108014778 22.306845383403537 30 18.385144978385185 27.969591008553024 32.57086832851357 21.074395684548225 31 20.504325928092936 26.832021158206214 27.21727287642097 25.446380037279877 32 21.074593350899285 30.85235707240321 27.142159663018404 20.930889913679103 33 19.852619968650117 26.37580721996114 26.94231898209736 26.82925382929139 34 22.47901277517627 27.34180267758839 27.104207723615005 23.07497682362034 35 19.11908013986871 26.37995821333339 28.37124903390571 26.1297126128922 36 18.951459074170344 30.257183689363377 27.16667029054977 23.62468694591651 37 18.450572540585846 27.764018003451252 32.088760098279714 21.696649357683192 38 19.100301836518067 26.849811129801566 25.93362759264128 28.116259441039094 39 23.128346738406375 28.09056281540137 27.044512485595064 21.736577960597188 40 20.416759734573624 24.605309713522157 29.466122952423685 25.511807599480534 41 20.462815994370462 28.71736281461071 27.139392334103572 23.68042885691526 42 18.809336967758643 26.328762628409002 30.491813648070874 24.37008675576148 43 21.069651692122797 28.066645186923182 27.22181920249534 23.641883918458678 44 20.93662223785983 25.152450173254557 29.349302138947586 24.56162544993803 45 20.055425644837054 24.13565446340504 27.950022039798146 27.858897851959764 46 22.623506877800686 27.888547804618675 27.018618193606287 22.46932712397436 47 17.976370964394363 25.209971081412842 34.03221566189566 22.78144229229714 48 19.94295349108426 26.07555203270192 28.6214946343469 25.35999984186692 49 19.535958474252972 23.890350521740334 32.52817239668474 24.045518607321956 50 20.257835988321872 24.273823242795554 29.420659691680022 26.047681077202544 51 19.33078080185332 23.665208547883683 27.92412774780936 29.07988290245363 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 109.0 1 357.0 2 605.0 3 3646.5 4 6688.0 5 4538.5 6 2389.0 7 2335.5 8 2282.0 9 2149.0 10 2016.0 11 1982.5 12 1949.0 13 1970.5 14 1992.0 15 1896.0 16 1800.0 17 1755.5 18 1711.0 19 1764.0 20 1817.0 21 1961.5 22 2106.0 23 2323.5 24 2541.0 25 3046.0 26 4282.0 27 5013.0 28 6085.5 29 7158.0 30 8657.0 31 10156.0 32 11304.0 33 12452.0 34 13338.0 35 14224.0 36 15752.0 37 17280.0 38 19195.0 39 21110.0 40 22794.5 41 24479.0 42 25952.5 43 27426.0 44 29990.5 45 32555.0 46 52424.5 47 72294.0 48 61084.0 49 49874.0 50 47860.0 51 45846.0 52 39353.5 53 32861.0 54 28446.0 55 24031.0 56 21219.5 57 18408.0 58 16868.5 59 15329.0 60 14328.5 61 13328.0 62 11851.0 63 10374.0 64 8723.5 65 7073.0 66 5622.5 67 4172.0 68 3471.0 69 2770.0 70 2393.5 71 2017.0 72 1717.0 73 1417.0 74 1196.5 75 867.0 76 758.0 77 613.5 78 469.0 79 368.0 80 267.0 81 203.0 82 139.0 83 95.5 84 52.0 85 36.0 86 20.0 87 16.5 88 13.0 89 8.5 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 505903.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.08546542869993 #Duplication Level Percentage of deduplicated Percentage of total 1 74.6444463514617 26.189351419086567 2 10.087693936409778 7.078628737224224 3 3.5557878127564995 3.742694111287822 4 1.8507428240964119 2.5973669348899655 5 1.2302655646900562 2.1582219969026486 6 0.9118274025868461 1.9195133286241233 7 0.7397417572493757 1.8167928695097098 8 0.6585603252540736 1.8484716419532148 9 0.5576611826229105 1.7609221929459642 >10 5.649969151057596 38.25826935671171 >50 0.07308088122051938 1.6746005010391696 >100 0.03229155216720619 2.1170528114620977 >500 0.002266073836295171 0.5764203505060637 >1k 0.00396562921351655 3.1893934290414814 >5k 0.0016995553772213784 5.0723003188152544 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTC 8988 1.7766251633218224 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCG 8303 1.6412237128461384 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGC 8228 1.626398736516684 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4032 0.7969907274714718 No Hit GCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGC 3142 0.6210676750286123 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATCACGCAT 2353 0.4651089240427513 No Hit GAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT 2089 0.41292500736307153 No Hit GAATGACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCT 1848 0.3652874167577579 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTC 1341 0.26507057677064577 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATCACGCATCGTA 1241 0.24530394166470648 No Hit CCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGC 882 0.17434172163438447 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCC 811 0.16030741070916757 No Hit CTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGCT 705 0.13935477749687195 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1423197727627628 0.0 2 0.0 0.0 0.0 1.1118732247090846 0.0 3 0.0 0.0 0.0 1.3923617768623628 0.0 4 0.0 0.0 0.0 2.15179589763255 0.0 5 0.0 0.0 0.0 4.9054858342409515 0.0 6 0.0 0.0 0.0 5.627363348309854 0.0 7 0.0 0.0 0.0 6.580115160416127 0.0 8 0.0 0.0 0.0 7.714127016443864 0.0 9 0.0 0.0 0.0 8.094832408584255 0.0 10 0.0 0.0 0.0 10.6127063883788 0.0 11 0.0 0.0 0.0 11.921059966040922 0.0 12 0.0 0.0 0.0 14.614461665576208 0.0 13 0.0 0.0 0.0 15.14756781438339 0.0 14 0.0 0.0 0.0 15.391092758888561 0.0 15 0.0 0.0 0.0 15.932105561738119 0.0 16 0.0 0.0 0.0 16.629670114626716 0.0 17 0.0 0.0 0.0 17.398196887545637 0.0 18 0.0 0.0 0.0 18.18372296665566 0.0 19 0.0 0.0 0.0 19.19399568692022 0.0 20 0.0 0.0 0.0 19.85163163689482 0.0 21 0.0 0.0 0.0 20.478036303402035 0.0 22 0.0 0.0 0.0 21.242214416597648 0.0 23 0.0 0.0 0.0 21.928116654773742 0.0 24 0.0 0.0 0.0 22.48869842637818 0.0 25 0.0 0.0 0.0 22.970608990260978 0.0 26 0.0 0.0 0.0 23.442240903888692 0.0 27 0.0 0.0 0.0 23.938778777749885 0.0 28 0.0 0.0 0.0 24.410213025026536 0.0 29 1.976663510593928E-4 0.0 0.0 24.93284285722757 0.0 30 1.976663510593928E-4 0.0 0.0 25.48670397289599 0.0 31 1.976663510593928E-4 0.0 0.0 26.016845126437282 0.0 32 1.976663510593928E-4 0.0 0.0 26.524254649606743 0.0 33 1.976663510593928E-4 0.0 0.0 27.021583188872174 0.0 34 1.976663510593928E-4 0.0 0.0 27.49202910439353 0.0 35 1.976663510593928E-4 0.0 0.0 28.008531279711722 0.0 36 1.976663510593928E-4 0.0 0.0 28.53135877826382 0.0 37 1.976663510593928E-4 0.0 0.0 29.059127935592397 0.0 38 1.976663510593928E-4 0.0 0.0 29.57286278199576 0.0 39 1.976663510593928E-4 0.0 0.0 30.07928397340992 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACGG 35 1.2101191E-7 45.000004 2 CTATGCG 20 7.029538E-4 45.0 1 CGGTTAT 20 7.029538E-4 45.0 42 CTGCCGG 20 7.029538E-4 45.0 2 CGAATAT 40 6.8012014E-9 45.0 14 CCGGTTA 20 7.029538E-4 45.0 41 ACGTAGG 20 7.029538E-4 45.0 2 TGTAACG 20 7.029538E-4 45.0 1 AGCCGTT 30 2.163084E-6 44.999996 45 ATCGTAG 30 2.163084E-6 44.999996 1 CGTTTTT 2330 0.0 42.972107 1 TACGGCT 855 0.0 42.894737 7 CGGCGAT 80 0.0 42.1875 31 TCGAATG 80 0.0 42.1875 44 TTAGCGG 70 0.0 41.785717 2 TTGTGCG 60 3.6379788E-12 41.249996 1 ACCACCG 560 0.0 40.982143 14 ACGGCTG 895 0.0 40.977654 8 CATAAGG 55 6.002665E-11 40.909092 2 CGCGAGG 50 1.0786607E-9 40.5 2 >>END_MODULE