SRR3551873_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551873_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	314461
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	9196	2.924368999653375	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	8437	2.6830036157106925	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	8120	2.582196202390757	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2971	0.9447912459732686	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	2509	0.7978731861820703	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGTACCGT	2191	0.696747768403713	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCT	1663	0.5288414143566292	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	1596	0.5075351156423213	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTA	1353	0.43026003224565207	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTC	1248	0.3968695641112888	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCAAGTACCG	495	0.157412206919141	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATG	476	0.1513701222091134	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	469	0.14914409100015583	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGT	409	0.13006382349480541	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	405	0.12879180566111537	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	356	0.11320958719841251	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTT	343	0.10907552923891993	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	328	0.10430546236258231	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCC	30	2.1604537E-6	45.000004	34
CTACGAA	65	0.0	45.000004	11
TACGAAT	65	0.0	45.000004	12
TGCTATA	30	2.1604537E-6	45.000004	32
AGCGTTC	20	7.025463E-4	45.0	7
ATTAGTC	25	3.8843227E-5	45.0	31
GCGACAC	20	7.025463E-4	45.0	33
CTCAACG	20	7.025463E-4	45.0	1
GTCGAAT	95	0.0	45.0	43
GTACACG	20	7.025463E-4	45.0	1
CGGCCTT	25	3.8843227E-5	45.0	44
GCGAACC	35	1.2081728E-7	45.0	33
TAGCGCG	25	3.8843227E-5	45.0	1
ACTCTCG	20	7.025463E-4	45.0	33
TTGTCCG	20	7.025463E-4	45.0	25
TTCGTAC	20	7.025463E-4	45.0	33
CGATTGG	25	3.8843227E-5	45.0	2
ACGGGCC	40	6.7884685E-9	45.0	5
CCGTCGA	95	0.0	45.0	41
CCCACGC	20	7.025463E-4	45.0	39