SRR3551871_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551871_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	305927
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC	8743	2.8578713222435415	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG	8294	2.711104283047917	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC	7839	2.562375991658141	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3404	1.1126837448149396	No Hit
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	2678	0.8753722293226817	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAATGCGGT	2300	0.7518133410911754	No Hit
GAACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCT	1925	0.6292350789567446	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCT	1800	0.5883756582452677	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTA	1412	0.4615480163568433	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTC	1382	0.45174175538608885	No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	787	0.25725091279945866	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC	748	0.2445027735374779	No Hit
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT	528	0.1725901930852785	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCAAATGCGG	456	0.14905516675546782	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATG	441	0.14415203627009057	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGT	395	0.12911576944826705	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTT	369	0.12061700994027987	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTAT	306	0.1000238619016955	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGG	20	7.025161E-4	45.000004	2
CACGGTT	20	7.025161E-4	45.000004	4
GTCGAAT	30	2.160261E-6	45.000004	43
GCACGGT	20	7.025161E-4	45.000004	3
TACGGTT	20	7.025161E-4	45.000004	33
GTGGCGT	20	7.025161E-4	45.000004	34
AAAACCG	20	7.025161E-4	45.000004	36
TACGCGG	20	7.025161E-4	45.000004	2
GTTCGCG	20	7.025161E-4	45.000004	1
TGCGATA	20	7.025161E-4	45.000004	32
TACGAAA	20	7.025161E-4	45.000004	20
TCGTACG	20	7.025161E-4	45.000004	30
ACATACG	20	7.025161E-4	45.000004	17
ACGGTTA	20	7.025161E-4	45.000004	34
CGAACCC	25	3.884072E-5	45.0	34
CGAACAC	25	3.884072E-5	45.0	34
CGCGGGC	25	3.884072E-5	45.0	4
GCGAACC	25	3.884072E-5	45.0	33
CCAGCGG	25	3.884072E-5	45.0	2
CGTTAGG	25	3.884072E-5	45.0	2