##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551871_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 305927 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.69548944682882 30.0 25.0 31.0 16.0 33.0 2 27.794460770052986 30.0 25.0 33.0 16.0 33.0 3 27.68967433407316 30.0 25.0 33.0 16.0 34.0 4 31.579543485864274 35.0 28.0 35.0 19.0 37.0 5 33.315379159080436 35.0 32.0 35.0 28.0 37.0 6 33.30667446809206 35.0 33.0 35.0 28.0 37.0 7 33.80577719521324 35.0 33.0 36.0 30.0 37.0 8 33.741810954901005 35.0 33.0 37.0 29.0 37.0 9 35.994181618490686 39.0 35.0 39.0 31.0 39.0 10 35.42578131384285 37.0 34.0 39.0 31.0 39.0 11 36.11360880209985 37.0 35.0 39.0 32.0 39.0 12 36.165147241008476 37.0 35.0 39.0 32.0 39.0 13 36.24680397611195 37.0 35.0 39.0 32.0 39.0 14 37.33329846662766 39.0 36.0 40.0 32.0 41.0 15 37.35119162414563 39.0 36.0 40.0 32.0 41.0 16 37.0092113478052 38.0 35.0 40.0 32.0 41.0 17 36.954930424578414 38.0 36.0 40.0 32.0 41.0 18 36.916133587424454 38.0 36.0 40.0 32.0 41.0 19 36.508134293475244 38.0 34.0 40.0 31.0 41.0 20 36.42902391747051 38.0 35.0 40.0 31.0 41.0 21 36.92557047923197 39.0 35.0 40.0 32.0 41.0 22 37.23924988641081 39.0 35.0 40.0 32.0 41.0 23 37.49835418253374 39.0 35.0 40.0 33.0 41.0 24 37.5338430409869 39.0 35.0 41.0 33.0 41.0 25 36.7836248516803 38.0 35.0 40.0 31.0 41.0 26 36.91220781428249 39.0 35.0 40.0 31.0 41.0 27 37.15519715487682 39.0 35.0 40.0 32.0 41.0 28 37.18529256979606 39.0 35.0 40.0 32.0 41.0 29 37.20791234510194 39.0 35.0 41.0 32.0 41.0 30 36.94911531182275 39.0 35.0 40.0 31.0 41.0 31 36.94163313470207 39.0 35.0 40.0 31.0 41.0 32 36.80614002686916 39.0 35.0 40.0 31.0 41.0 33 36.715200031380036 39.0 36.0 41.0 30.0 41.0 34 36.5153909265936 40.0 35.0 41.0 30.0 41.0 35 36.46496713268198 40.0 35.0 41.0 30.0 41.0 36 36.311133048080094 40.0 35.0 41.0 29.0 41.0 37 36.21838870057236 39.0 35.0 41.0 30.0 41.0 38 36.177705792558356 39.0 35.0 41.0 30.0 41.0 39 36.00490966799269 39.0 35.0 41.0 28.0 41.0 40 35.86676233219036 39.0 35.0 40.0 27.0 41.0 41 35.77341653400975 39.0 35.0 40.0 26.0 41.0 42 35.9464414713314 39.0 35.0 41.0 28.0 41.0 43 35.96231453908939 39.0 35.0 41.0 28.0 41.0 44 36.07766885564203 39.0 35.0 41.0 29.0 41.0 45 36.116691236798324 39.0 35.0 40.0 29.0 41.0 46 35.967302657169846 39.0 35.0 40.0 28.0 41.0 47 35.7229796650835 39.0 35.0 40.0 26.0 41.0 48 35.90785056565782 39.0 35.0 40.0 28.0 41.0 49 35.91729726372631 39.0 35.0 40.0 28.0 41.0 50 35.757903029154015 39.0 35.0 40.0 27.0 41.0 51 34.87259705746796 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 15.0 11 11.0 12 12.0 13 17.0 14 13.0 15 15.0 16 44.0 17 63.0 18 149.0 19 355.0 20 671.0 21 1013.0 22 1411.0 23 1875.0 24 2788.0 25 3888.0 26 4381.0 27 4477.0 28 4594.0 29 4737.0 30 5802.0 31 7564.0 32 10064.0 33 14617.0 34 20125.0 35 25245.0 36 37411.0 37 60198.0 38 72611.0 39 21758.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.46099559698882 16.970715235987672 17.821571812883466 17.74671735414004 2 31.06427350315598 33.50799373706799 18.81298479702674 16.61474796274928 3 24.918362877418467 31.46208082320292 28.07499828390433 15.54455801547428 4 24.103789466114463 21.032141654708475 38.875287241727605 15.988781637449456 5 30.724976873567876 23.59288326953816 26.512860911263143 19.169278945630822 6 21.30116008067284 36.90063315758334 28.262624743811433 13.535582017932382 7 64.81742376449283 5.649386945251645 24.53297682126782 5.0002124689877 8 62.429926093479814 14.235095300512867 16.469288425016426 6.86569018099089 9 57.46861179300944 8.121872211344536 16.56669728399259 17.842818711653432 10 34.33368091080552 24.54212933150719 25.945732151787844 15.178457605899446 11 27.367313117181553 22.331471233333442 30.57396045461826 19.72725519486675 12 23.078708319304933 18.228858518535468 34.837722724702296 23.854710437457303 13 22.87669934330739 20.66015748855119 39.31853023760571 17.144612930535715 14 18.98753624230617 28.34172858230885 31.025048459272963 21.645686716112014 15 16.361746429703818 24.27932153749097 40.04027104505323 19.31866098775198 16 17.378328817005364 25.964364047632277 30.933196481513566 25.724110653848793 17 18.152696558329275 26.543587195638175 34.43599290026706 20.867723345765494 18 16.771975013647047 26.38014951279227 34.36996407639731 22.477911397163375 19 17.499599577677028 27.404250033504724 31.416318272006066 23.67983211681218 20 19.497788688151093 26.854772543776782 37.621066463568106 16.026372304504015 21 20.28228956581145 29.720161999431237 32.72578098696748 17.27176744778983 22 17.24986679828848 22.92311564523563 35.305154497641595 24.5218630588343 23 18.427925616241783 27.681767218977075 34.38500034321913 19.50530682156201 24 20.648063100020593 24.927188512292147 30.589977347537157 23.834771040150102 25 16.36926456311473 33.59265445678217 29.26351711355977 20.774563866543325 26 16.593174188613624 26.794954351855182 33.63678263115057 22.975088828380628 27 21.332213240413562 28.176329647268794 29.784556446472525 20.706900665845122 28 15.23108453977583 28.609112631444756 34.588316820679445 21.57148600809997 29 19.24347965364286 27.38627188839168 32.52344513560425 20.846803322361218 30 18.552465130570365 33.040235088763005 30.66842743530319 17.738872345363436 31 19.303624720930156 29.124921958506437 27.622275902421165 23.949177418142238 32 22.374618781604763 29.730295135767683 30.045402988294594 17.84968309433296 33 23.06530642931157 25.214838834100945 26.5903303729321 25.12952436365538 34 20.317265229940475 27.643522801191132 28.188424035799393 23.850787933069 35 23.239204123859615 27.57782085268708 26.934857008371278 22.24811801508203 36 22.51321393665809 32.335491800331454 25.47699287738578 19.674301385624677 37 18.287369208994303 28.467575598100197 33.98882740000065 19.25622779290484 38 23.266661654577725 28.59832574437693 25.907487734001904 22.227524867043442 39 22.769157347994785 24.927515387657838 30.515449764159424 21.787877500187953 40 25.151751888522426 23.949177418142238 29.57339496023561 21.32567573309973 41 22.537075838353594 27.2895167801469 25.650563696568135 24.522843684931374 42 23.435329343274702 24.5695868622253 31.764440536467852 20.230643258032146 43 25.879376452552407 24.71079702020417 27.484661373464913 21.92516515377852 44 21.025931022760332 25.171691285829628 29.85025839497658 23.952119296433462 45 20.480049162055 23.491551906173694 28.502878137594916 27.52552079417639 46 25.310286440882955 26.793319975026726 27.984126932242003 19.912266651848316 47 19.077426967871418 24.518267429811686 36.37599819564798 20.02830740666891 48 21.18250432292671 26.120283597067274 27.628813409735002 25.068398670271012 49 20.64152559270676 22.004595867641626 35.401909605886374 21.951968933765244 50 22.539363965913438 21.85292569796062 31.39932075299009 24.208389583135844 51 21.20538559852514 21.458714006936294 28.425081800560264 28.910818593978306 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 118.0 1 284.0 2 450.0 3 3119.5 4 5789.0 5 3969.5 6 2150.0 7 2050.5 8 1951.0 9 1883.0 10 1815.0 11 1772.5 12 1730.0 13 1704.5 14 1679.0 15 1593.5 16 1508.0 17 1412.5 18 1317.0 19 1382.5 20 1448.0 21 1396.0 22 1344.0 23 1469.0 24 1594.0 25 2040.0 26 2670.0 27 2854.0 28 3453.0 29 4052.0 30 4601.5 31 5151.0 32 5916.5 33 6682.0 34 7494.0 35 8306.0 36 8867.5 37 9429.0 38 10471.0 39 11513.0 40 12646.5 41 13780.0 42 14561.5 43 15343.0 44 16947.5 45 18552.0 46 36797.0 47 55042.0 48 42698.5 49 30355.0 50 29398.5 51 28442.0 52 23771.0 53 19100.0 54 16402.5 55 13705.0 56 11804.5 57 9904.0 58 8899.0 59 7894.0 60 7288.5 61 6683.0 62 5769.5 63 4856.0 64 4156.5 65 3457.0 66 2678.0 67 1899.0 68 1587.0 69 1275.0 70 1059.0 71 843.0 72 675.0 73 507.0 74 452.5 75 314.5 76 231.0 77 178.5 78 126.0 79 108.0 80 90.0 81 68.5 82 47.0 83 35.5 84 24.0 85 14.0 86 4.0 87 3.0 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 305927.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.30678397765067 #Duplication Level Percentage of deduplicated Percentage of total 1 76.8175564402864 30.962686531296114 2 9.316975910092374 7.510746706661371 3 3.448704832312568 4.170186020361079 4 1.8834610580615874 3.0366503199042305 5 1.3551420248230062 2.731070842678852 6 0.9779831099607323 2.3651612368186927 7 0.8778733096163202 2.4768974895315177 8 0.677079208035539 2.1832708299237815 9 0.6396847435131177 2.3205271293523895 >10 3.921006884271152 25.076248875346234 >50 0.045517488706961845 1.2737807172501414 >100 0.02844843044185115 2.185215376558242 >500 0.002438436895015813 0.6758769597960499 >1k 0.005689686088370231 4.881843227300504 >5k 0.002438436895015813 8.149837737220812 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC 8743 2.8578713222435415 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG 8294 2.711104283047917 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC 7839 2.562375991658141 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3404 1.1126837448149396 No Hit GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC 2678 0.8753722293226817 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAATGCGGT 2300 0.7518133410911754 No Hit GAACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCT 1925 0.6292350789567446 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCT 1800 0.5883756582452677 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTA 1412 0.4615480163568433 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTC 1382 0.45174175538608885 No Hit CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC 787 0.25725091279945866 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC 748 0.2445027735374779 No Hit CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT 528 0.1725901930852785 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCAAATGCGG 456 0.14905516675546782 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATG 441 0.14415203627009057 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGT 395 0.12911576944826705 No Hit GAATGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTT 369 0.12061700994027987 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTAT 306 0.1000238619016955 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1892608367355611 0.0 2 0.0 0.0 0.0 1.573904885806091 0.0 3 0.0 0.0 0.0 1.9403321707466161 0.0 4 0.0 0.0 0.0 3.0425559038594177 0.0 5 0.0 0.0 0.0 7.07456353966796 0.0 6 0.0 0.0 0.0 7.847950654894795 0.0 7 0.0 0.0 0.0 9.043660742595456 0.0 8 0.0 0.0 0.0 10.300496523680486 0.0 9 0.0 0.0 0.0 10.661693802769943 0.0 10 0.0 0.0 0.0 14.265167834156514 0.0 11 0.0 0.0 0.0 15.771736394630091 0.0 12 0.0 0.0 0.0 19.499749940345247 0.0 13 0.0 0.0 0.0 20.171151941476236 0.0 14 3.268753656918154E-4 0.0 0.0 20.500642310093586 0.0 15 3.268753656918154E-4 0.0 0.0 21.321426353345732 0.0 16 3.268753656918154E-4 0.0 0.0 22.12227099929068 0.0 17 3.268753656918154E-4 0.0 0.0 22.99502822568783 0.0 18 3.268753656918154E-4 0.0 0.0 23.83640541697856 0.0 19 3.268753656918154E-4 0.0 0.0 25.250795124327045 0.0 20 3.268753656918154E-4 0.0 0.0 26.025162865650955 0.0 21 3.268753656918154E-4 0.0 0.0 26.712581759700843 0.0 22 3.268753656918154E-4 0.0 0.0 27.518002660765475 0.0 23 3.268753656918154E-4 0.0 0.0 28.272431004782188 0.0 24 3.268753656918154E-4 0.0 0.0 28.86865167180406 0.0 25 3.268753656918154E-4 0.0 0.0 29.417802286166307 0.0 26 3.268753656918154E-4 0.0 0.0 29.890464064956674 0.0 27 3.268753656918154E-4 0.0 0.0 30.418367780548955 0.0 28 3.268753656918154E-4 0.0 0.0 30.932215855416487 0.0 29 3.268753656918154E-4 0.0 0.0 31.45260143759786 0.0 30 3.268753656918154E-4 0.0 0.0 32.02659457975269 0.0 31 3.268753656918154E-4 0.0 0.0 32.55024891559098 0.0 32 3.268753656918154E-4 0.0 0.0 33.039581338031624 0.0 33 3.268753656918154E-4 0.0 0.0 33.5276062590095 0.0 34 3.268753656918154E-4 0.0 0.0 34.04733809045949 0.0 35 3.268753656918154E-4 0.0 0.0 34.5621667914241 0.0 36 3.268753656918154E-4 0.0 0.0 35.060978599469806 0.0 37 3.268753656918154E-4 0.0 0.0 35.586267312136556 0.0 38 3.268753656918154E-4 0.0 0.0 36.07461910848013 0.0 39 6.537507313836308E-4 0.0 0.0 36.60252282407241 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCGG 20 7.025161E-4 45.000004 2 CACGGTT 20 7.025161E-4 45.000004 4 GTCGAAT 30 2.160261E-6 45.000004 43 GCACGGT 20 7.025161E-4 45.000004 3 TACGGTT 20 7.025161E-4 45.000004 33 GTGGCGT 20 7.025161E-4 45.000004 34 AAAACCG 20 7.025161E-4 45.000004 36 TACGCGG 20 7.025161E-4 45.000004 2 GTTCGCG 20 7.025161E-4 45.000004 1 TGCGATA 20 7.025161E-4 45.000004 32 TACGAAA 20 7.025161E-4 45.000004 20 TCGTACG 20 7.025161E-4 45.000004 30 ACATACG 20 7.025161E-4 45.000004 17 ACGGTTA 20 7.025161E-4 45.000004 34 CGAACCC 25 3.884072E-5 45.0 34 CGAACAC 25 3.884072E-5 45.0 34 CGCGGGC 25 3.884072E-5 45.0 4 GCGAACC 25 3.884072E-5 45.0 33 CCAGCGG 25 3.884072E-5 45.0 2 CGTTAGG 25 3.884072E-5 45.0 2 >>END_MODULE