SRR3551868_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551868_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353352
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG	9555	2.7041024247775587	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC	9351	2.64636962575562	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC	9073	2.5676945368923905	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3679	1.0411714098123117	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	3104	0.8784441576671421	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCGTAAGT	2710	0.7669406144581041	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCT	2124	0.6011003192284181	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCT	2075	0.5872331273064819	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTA	1901	0.5379904457877697	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTC	1515	0.42875093391292535	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	771	0.21819601983291448	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	715	0.20234780049355883	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	664	0.18791460073807423	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATG	553	0.1565011659761371	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTCGTAAG	535	0.15140709547420136	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGT	520	0.14716203672258824	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTAT	426	0.12055966854581267	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTT	396	0.11206955104258642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	35	1.2087366E-7	45.000004	2
CGAAAGG	35	1.2087366E-7	45.000004	2
CGAATAT	70	0.0	45.000004	14
GCGGCTA	35	1.2087366E-7	45.000004	24
TAACGCC	20	7.026649E-4	45.0	12
TTATCGG	20	7.026649E-4	45.0	2
TACATGA	20	7.026649E-4	45.0	38
TCTCGAG	20	7.026649E-4	45.0	1
CATCGTT	20	7.026649E-4	45.0	36
ACGTGCG	25	3.885305E-5	44.999996	1
CCGTTGA	25	3.885305E-5	44.999996	16
CTAGCGG	30	2.1612195E-6	44.999996	2
CGTTTTT	1910	0.0	43.82199	1
TACGGCT	1035	0.0	43.26087	7
ACGGCTG	1070	0.0	42.266354	8
TACGAAT	75	0.0	42.000004	12
GCTACGA	75	0.0	42.000004	10
TAGCGGG	65	0.0	41.538464	3
GACCGAT	65	0.0	41.538464	9
TGATACC	1115	0.0	41.367714	4