SRR3551866_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551866_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	373080
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	7274	1.9497158786319289	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	7028	1.883778278117294	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	6962	1.866087702369465	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3022	0.8100139380293772	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	2190	0.5870054679961403	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGGCATT	1983	0.5315213895143133	No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	1606	0.43047067653050286	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCT	1377	0.36908973946606627	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTA	1066	0.2857296022300847	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTC	957	0.2565133483435188	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	525	0.14072048890318428	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	501	0.13428755226761016	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGAGGCAT	462	0.12383403023480219	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTT	412	0.1104320789106894	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCAC	30	2.1615451E-6	45.000004	34
CGAAATA	20	7.027155E-4	45.0	12
CGACGGT	20	7.027155E-4	45.0	28
CCGATCG	20	7.027155E-4	45.0	40
CCCCGAC	25	3.885723E-5	45.0	38
TGCGAAG	25	3.885723E-5	45.0	1
CGGGCTA	20	7.027155E-4	45.0	6
CGTACTA	20	7.027155E-4	45.0	29
TACTCGC	20	7.027155E-4	45.0	45
ATGCGCG	25	3.885723E-5	45.0	1
GTAAGCG	25	3.885723E-5	45.0	1
CGATCGA	20	7.027155E-4	45.0	41
TTACACG	25	3.885723E-5	45.0	34
TCGAATA	20	7.027155E-4	45.0	44
ACGACTA	20	7.027155E-4	45.0	12
TACGTAG	20	7.027155E-4	45.0	1
CGTTTTT	1790	0.0	42.486034	1
ACGGCTG	760	0.0	42.039474	8
TACGGCT	760	0.0	41.74342	7
CCGATGA	520	0.0	41.53846	18