##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551863_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 468367 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.71341704261829 30.0 25.0 31.0 16.0 33.0 2 27.811274064996038 30.0 25.0 33.0 16.0 33.0 3 27.61806660161796 30.0 25.0 33.0 16.0 34.0 4 31.7527387710919 35.0 28.0 35.0 19.0 37.0 5 33.30605273215235 35.0 32.0 35.0 28.0 37.0 6 33.29280030403508 35.0 33.0 35.0 28.0 37.0 7 33.7809303388155 35.0 33.0 36.0 30.0 37.0 8 33.626107304741794 35.0 33.0 37.0 28.0 37.0 9 35.569553363067854 37.0 35.0 39.0 28.0 39.0 10 35.19409138560146 37.0 34.0 39.0 31.0 39.0 11 35.99922283166833 37.0 35.0 39.0 32.0 39.0 12 36.042466698123484 37.0 35.0 39.0 32.0 39.0 13 36.06964837403147 37.0 35.0 39.0 32.0 39.0 14 37.12172932764264 39.0 36.0 40.0 32.0 41.0 15 37.15724207725992 39.0 36.0 40.0 32.0 41.0 16 36.66120798433707 38.0 35.0 40.0 32.0 41.0 17 36.711871246266284 38.0 35.0 40.0 32.0 41.0 18 36.64592723227725 38.0 35.0 40.0 32.0 41.0 19 36.19512476327324 37.0 34.0 40.0 30.0 41.0 20 36.33072996176075 38.0 35.0 40.0 30.0 41.0 21 36.83398915807476 38.0 35.0 40.0 32.0 41.0 22 37.18950950856914 39.0 35.0 40.0 32.0 41.0 23 37.46837202450215 39.0 36.0 40.0 33.0 41.0 24 37.44168141649604 39.0 35.0 41.0 32.0 41.0 25 36.72802951531598 38.0 35.0 40.0 31.0 41.0 26 36.94383677756973 39.0 35.0 40.0 32.0 41.0 27 37.198094656540704 39.0 35.0 40.0 32.0 41.0 28 37.101014802494625 39.0 35.0 40.0 31.0 41.0 29 37.305162404695466 39.0 36.0 41.0 32.0 41.0 30 36.947968153179026 39.0 35.0 40.0 31.0 41.0 31 37.0710148238454 39.0 35.0 40.0 31.0 41.0 32 37.011326587910766 39.0 36.0 40.0 31.0 41.0 33 37.00062984796111 39.0 36.0 41.0 31.0 41.0 34 36.963579842303155 40.0 36.0 41.0 31.0 41.0 35 36.88034169785659 40.0 36.0 41.0 31.0 41.0 36 36.625048306136 39.0 35.0 41.0 30.0 41.0 37 36.729654309547854 39.0 35.0 41.0 31.0 41.0 38 36.71890846280801 39.0 35.0 41.0 31.0 41.0 39 36.61298084621675 39.0 35.0 41.0 31.0 41.0 40 36.47132056699127 39.0 35.0 40.0 30.0 41.0 41 36.24584353722615 39.0 35.0 40.0 30.0 41.0 42 36.478432511257196 39.0 35.0 40.0 30.0 41.0 43 36.503852747951925 39.0 35.0 40.0 31.0 41.0 44 36.66407966402415 39.0 35.0 40.0 31.0 41.0 45 36.73949701836381 39.0 36.0 40.0 31.0 41.0 46 36.62366264062156 39.0 35.0 40.0 31.0 41.0 47 36.39852508823209 39.0 35.0 40.0 30.0 41.0 48 36.60558280152103 39.0 35.0 40.0 31.0 41.0 49 36.62479850202939 39.0 35.0 41.0 31.0 41.0 50 36.47049642694724 39.0 35.0 41.0 31.0 41.0 51 35.64045929794371 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 7.0 10 8.0 11 9.0 12 9.0 13 14.0 14 13.0 15 23.0 16 42.0 17 93.0 18 167.0 19 384.0 20 746.0 21 1269.0 22 1775.0 23 2335.0 24 3243.0 25 4226.0 26 5073.0 27 5313.0 28 5765.0 29 6803.0 30 8779.0 31 12025.0 32 16703.0 33 24887.0 34 33407.0 35 40200.0 36 59617.0 37 94299.0 38 110355.0 39 30774.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.7627586913681 15.514543082668078 19.217195062846017 17.50550316311781 2 27.71651290547797 33.687258068992904 20.407287447663904 18.18894157786522 3 25.368354303356128 32.57872565744384 25.8098883994816 16.243031639718424 4 24.92660669944723 19.27270708653684 38.39147506122336 17.409211152792576 5 31.248572166698334 22.781280491580322 25.22807968964509 20.74206765207626 6 21.314055003875165 37.16060268977105 26.985675762809937 14.539666543543845 7 62.41900048466267 6.1101657460922745 24.789961718054432 6.680872051190626 8 58.071127982970616 15.230150715144319 16.95913674533005 9.739584556555009 9 53.427760709016646 8.446581420125671 17.242248066153252 20.88340980470443 10 33.55104010316696 23.85992181344971 25.771029982898025 16.818008100485304 11 28.72789927556809 21.486996308450422 28.874152107215068 20.91095230876642 12 24.71267190045413 17.49205217276196 33.77906641586619 24.016209510917722 13 22.645062525754376 20.58940958692649 39.29290492284896 17.47262296447017 14 18.653321006817304 27.62150194185329 29.526631893365675 24.198545157963732 15 15.69815977641465 23.287080430517097 41.704048321081544 19.31071147198671 16 17.37761200084549 25.772524537382008 28.63011271075887 28.219750751013628 17 17.17029594313861 26.54819831456956 33.38749314106246 22.894012601229377 18 16.526783483891904 25.795156362425192 34.23511904126465 23.442941112418254 19 16.723424152427476 27.090294576688795 29.853725817574677 26.33255545330905 20 18.425294694118076 27.352268626952796 36.928519729186725 17.293916949742403 21 19.470415293989543 30.03862355802181 32.03705641089146 18.45390473709719 22 16.52763751502561 22.430700711194426 33.292695685221204 27.748966088558756 23 17.847115616599805 27.636020471126276 33.67039095410223 20.84647295817169 24 22.37006450070137 23.14595178567235 28.79664878183134 25.687334931794936 25 15.877506314492695 33.13512694105263 27.20857788870693 23.778788855747738 26 16.454190837526983 23.140827598870118 32.525562219370705 27.879419344232193 27 21.57581554635574 25.072005499960504 29.54606110165746 23.806117852026297 28 13.805840291907842 23.655594864710793 36.570894191947765 25.9676706514336 29 19.638659427329426 20.29434183023142 31.848529038126085 28.21846970431307 30 16.81544600708419 25.920058415729546 35.890871901735174 21.37362367545109 31 19.135208074010336 21.512617242461573 33.58968501196711 25.762489671560978 32 21.98745855280154 24.108658381141286 32.09769262138451 21.80619044467266 33 18.90696825352768 20.423727546987724 29.467703745140028 31.201600454344565 34 19.599801010745846 20.198690343256466 35.03620024467992 25.16530840131777 35 22.434757359079523 19.587844574873976 32.10708696385527 25.87031110219123 36 22.917925472973117 21.17121829676301 31.977487739315535 23.933368490948336 37 17.705986971755056 20.150864599768983 42.62149126646412 19.52165716201184 38 19.68840674086774 22.203101414062047 30.25020977139722 27.858282073672996 39 22.165951059745883 19.846402500603162 36.6069770073468 21.380669432304156 40 22.48151556364987 19.94077294087756 32.52278661818617 25.0549248772864 41 22.341454457722257 23.085315575179294 30.523926749749663 24.04930321734879 42 23.294766710720438 19.38351762613506 35.33511114147666 21.98660452166784 43 26.050298163619555 19.577169185702665 28.842552955267987 25.529979695409793 44 20.744629745477372 18.897360403273503 33.079828425145244 27.278181426103888 45 19.19541726893654 17.948318305943843 31.900838445065517 30.955425980054102 46 26.03321754094545 22.415114643004312 30.059760828581005 21.49190698746923 47 16.270360635996987 19.60535221311493 41.012283102780515 23.112004048107572 48 20.800782292518473 21.002120132289424 30.89820589409587 27.298891681096233 49 20.01913029739499 17.233067231465924 39.185724015568994 23.5620784555701 50 22.018630689181773 16.87864431097836 33.89649569675062 27.206229303089245 51 19.755234677080153 17.05179912333704 30.32963466683178 32.863331532751026 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 220.0 1 389.0 2 558.0 3 3422.0 4 6286.0 5 4165.0 6 2044.0 7 2004.0 8 1964.0 9 1854.0 10 1744.0 11 1738.5 12 1733.0 13 1615.0 14 1497.0 15 1485.0 16 1473.0 17 1444.5 18 1416.0 19 1424.5 20 1433.0 21 1482.0 22 1531.0 23 1715.5 24 1900.0 25 2408.5 26 3363.0 27 3809.0 28 4503.5 29 5198.0 30 5783.5 31 6369.0 32 7275.5 33 8182.0 34 9209.0 35 10236.0 36 11231.0 37 12226.0 38 12949.0 39 13672.0 40 15195.0 41 16718.0 42 19037.5 43 21357.0 44 24469.5 45 27582.0 46 62749.5 47 97917.0 48 75150.5 49 52384.0 50 51603.5 51 50823.0 52 40401.5 53 29980.0 54 25754.5 55 21529.0 56 19080.5 57 16632.0 58 14705.0 59 12778.0 60 11635.0 61 10492.0 62 9106.0 63 7720.0 64 6792.0 65 5864.0 66 4650.0 67 3436.0 68 2808.0 69 2180.0 70 1858.5 71 1537.0 72 1256.0 73 975.0 74 872.0 75 643.5 76 518.0 77 424.5 78 331.0 79 275.0 80 219.0 81 172.0 82 125.0 83 76.0 84 27.0 85 29.5 86 32.0 87 23.5 88 15.0 89 8.5 90 2.0 91 8.0 92 14.0 93 8.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 468367.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.943998046957994 #Duplication Level Percentage of deduplicated Percentage of total 1 73.3523124968484 24.898707521328745 2 11.5141308032104 7.816712669931852 3 4.1948090155730355 4.271657670959187 4 2.1344607902284074 2.898085315792859 5 1.32969631146699 2.256760449974137 6 0.9414615011220465 1.9174180413223731 7 0.6903626848309091 1.640356873791514 8 0.5842627488372719 1.5865770884354133 9 0.5001534812154443 1.5279487910600653 >10 4.614952360692215 29.225868874175298 >50 0.08717575869837114 1.9412084070648767 >100 0.04358787934918557 2.5628325285805156 >500 0.005053667170920067 1.198647409200559 >1k 0.005053667170920067 5.255179016938694 >5k 6.317083963650083E-4 1.3127226188060506 >10k+ 0.001895125189095025 9.689316722637864 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 16959 3.6208784991256855 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCG 15840 3.3819632894717175 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGC 12388 2.644934421084321 No Hit GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 6122 1.3070946501354708 No Hit GAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT 4195 0.8956651514730969 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3852 0.822431981757895 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCT 3709 0.791900368727942 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTCTGGT 3564 0.7609417401311365 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTC 2875 0.6138348773504538 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTA 2524 0.5388936453678419 No Hit CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 2281 0.48701125399526435 No Hit CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT 1508 0.32196973740677715 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 869 0.18553826379740673 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATG 831 0.17742496802720945 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCTTTCTGG 780 0.16653607107247093 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTT 713 0.15223104958291253 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC 675 0.14411775381271524 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGT 648 0.13835304366020665 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTAT 558 0.11913734315184461 No Hit ACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 516 0.11017001624794232 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.329656017610122 0.0 2 0.0 0.0 0.0 2.490141278100293 0.0 3 0.0 0.0 0.0 3.0083246684757894 0.0 4 0.0 0.0 0.0 4.581236508976935 0.0 5 0.0 0.0 0.0 9.918504079066203 0.0 6 0.0 0.0 0.0 11.023406858297019 0.0 7 0.0 0.0 0.0 12.807264388823295 0.0 8 0.0 0.0 0.0 14.739936844397663 0.0 9 0.0 0.0 0.0 15.296978651356735 0.0 10 0.0 0.0 0.0 19.935221738508478 0.0 11 0.0 0.0 0.0 21.719506284601604 0.0 12 0.0 0.0 0.0 25.896145543985806 0.0 13 0.0 0.0 0.0 26.755087356709588 0.0 14 0.0 0.0 0.0 27.14964974048129 0.0 15 0.0 0.0 0.0 28.17811673324551 0.0 16 0.0 0.0 0.0 29.149577147834925 0.0 17 0.0 0.0 0.0 30.138972216232144 0.0 18 0.0 0.0 0.0 31.187081925071578 0.0 19 0.0 0.0 0.0 32.69658195389513 0.0 20 0.0 0.0 0.0 33.61893557829651 0.0 21 0.0 0.0 0.0 34.54150271048131 0.0 22 0.0 0.0 0.0 35.53623547346419 0.0 23 0.0 0.0 0.0 36.37468053897905 0.0 24 0.0 0.0 0.0 37.045735502287734 0.0 25 0.0 0.0 0.0 37.712306802144475 0.0 26 0.0 0.0 0.0 38.282372583892545 0.0 27 0.0 0.0 0.0 38.923749965304985 0.0 28 0.0 0.0 0.0 39.5266959457007 0.0 29 0.0 0.0 0.0 40.14714956433737 0.0 30 0.0 0.0 0.0 40.769524753024875 0.0 31 0.0 0.0 0.0 41.400226745265996 0.0 32 0.0 0.0 0.0 41.95363891990682 0.0 33 0.0 0.0 0.0 42.53929076984502 0.0 34 0.0 0.0 0.0 43.120672464114676 0.0 35 0.0 0.0 0.0 43.705470282919165 0.0 36 0.0 0.0 0.0 44.24863408395553 0.0 37 0.0 0.0 0.0 44.806316414264884 0.0 38 0.0 0.0 0.0 45.36826890024276 0.0 39 0.0 0.0 0.0 45.92317562936757 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGGGC 30 2.1627366E-6 45.000004 4 GTCGTAG 25 3.887253E-5 45.000004 1 AGCGATG 30 2.1627366E-6 45.000004 1 AACGACG 25 3.887253E-5 45.000004 1 ACGTCGG 25 3.887253E-5 45.000004 2 CGGTCGA 30 2.1627366E-6 45.000004 41 CTCCGAT 20 7.0290023E-4 45.0 31 CAACGAA 20 7.0290023E-4 45.0 15 CGACGAA 20 7.0290023E-4 45.0 19 GGCAACG 35 1.2098644E-7 45.0 1 CGTAAGG 45 3.8380676E-10 45.0 2 ACTCCGA 20 7.0290023E-4 45.0 30 CCACCGT 20 7.0290023E-4 45.0 15 CGTTTTT 2110 0.0 44.146923 1 TACGGCT 1385 0.0 44.02527 7 ACGGCTG 1430 0.0 42.797203 8 ACGAAGG 80 0.0 42.1875 2 CGGCTGT 1470 0.0 41.785713 9 CGATGAA 325 0.0 41.538464 19 CGAATAT 65 0.0 41.53846 14 >>END_MODULE