SRR3551862_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551862_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	467413
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG	1783	0.38146136286324944	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1570	0.33589138513477373	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	1566	0.335035610905131	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	1486	0.31792012631227634	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	1147	0.24539326035005446	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	568	0.12151994060926846	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	512	0.10953910139427016	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	505	0.10804149649239538	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGGTC	125	0.0	45.000004	5
TGTAGCG	35	1.2098644E-7	45.000004	1
TAGTGCG	35	1.2098644E-7	45.000004	1
AGCCGAT	20	7.028987E-4	45.0	44
ACACGAA	20	7.028987E-4	45.0	45
CCGATTC	20	7.028987E-4	45.0	45
CGGCATG	25	3.887241E-5	45.0	31
CACGCTT	20	7.028987E-4	45.0	29
TTCACGC	20	7.028987E-4	45.0	27
ATAGAGT	25	3.887241E-5	45.0	11
CGATTGC	25	3.887241E-5	45.0	10
CGCGAGG	110	0.0	45.0	2
AAACGTC	20	7.028987E-4	45.0	11
AGACGGC	25	3.887241E-5	45.0	12
GCCGATT	25	3.887241E-5	45.0	14
TACGATC	20	7.028987E-4	45.0	13
CTTGCGT	20	7.028987E-4	45.0	25
ACGGACC	20	7.028987E-4	45.0	20
CGAATAT	80	0.0	45.0	14
ACGCTTC	20	7.028987E-4	45.0	30