##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551862_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 467413 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.23420615173305 28.0 25.0 31.0 16.0 33.0 2 27.71935739913096 31.0 25.0 33.0 16.0 34.0 3 27.545817082537287 31.0 25.0 33.0 16.0 34.0 4 31.6441733541857 35.0 28.0 37.0 19.0 37.0 5 33.18219219405536 35.0 32.0 35.0 28.0 37.0 6 32.86849531356638 35.0 32.0 35.0 28.0 37.0 7 34.150716817889105 35.0 33.0 37.0 31.0 37.0 8 34.05612595285112 35.0 35.0 37.0 31.0 37.0 9 36.42262410330906 39.0 37.0 39.0 32.0 39.0 10 35.476574250181315 37.0 34.0 39.0 31.0 39.0 11 35.97593990753359 37.0 35.0 39.0 31.0 39.0 12 35.93271261175877 37.0 35.0 39.0 31.0 39.0 13 36.05689401022222 37.0 35.0 39.0 32.0 39.0 14 36.916968505368914 39.0 36.0 40.0 32.0 41.0 15 37.20477821541121 39.0 36.0 40.0 32.0 41.0 16 36.713366979523464 38.0 35.0 40.0 32.0 41.0 17 36.974906560151304 38.0 35.0 40.0 32.0 41.0 18 36.706976485463606 38.0 35.0 40.0 32.0 41.0 19 36.309991378074635 38.0 34.0 40.0 30.0 41.0 20 36.86450740565624 38.0 35.0 40.0 32.0 41.0 21 36.896284442238446 39.0 35.0 40.0 32.0 41.0 22 37.29895189051224 39.0 35.0 40.0 33.0 41.0 23 37.67327609630028 39.0 36.0 40.0 33.0 41.0 24 37.74159041361708 39.0 36.0 41.0 33.0 41.0 25 36.599775787151835 38.0 35.0 40.0 31.0 41.0 26 36.97370205792308 39.0 35.0 40.0 32.0 41.0 27 37.30922759957468 39.0 35.0 40.0 33.0 41.0 28 37.38554126650307 39.0 35.0 41.0 33.0 41.0 29 37.5147481991301 39.0 35.0 41.0 33.0 41.0 30 37.084766576881684 39.0 35.0 40.0 32.0 41.0 31 37.22295272061325 39.0 35.0 40.0 33.0 41.0 32 37.19018298592465 39.0 35.0 40.0 33.0 41.0 33 37.29632680306282 39.0 35.0 41.0 33.0 41.0 34 37.340919058733924 40.0 35.0 41.0 33.0 41.0 35 37.29709913930507 40.0 35.0 41.0 33.0 41.0 36 37.16743864633632 40.0 35.0 41.0 33.0 41.0 37 37.22063999075764 40.0 35.0 41.0 33.0 41.0 38 37.05871894876694 39.0 35.0 41.0 33.0 41.0 39 37.00009199572969 39.0 35.0 41.0 32.0 41.0 40 36.86730792682275 39.0 35.0 41.0 32.0 41.0 41 36.71194853373783 39.0 35.0 40.0 31.0 41.0 42 36.83124987965675 39.0 35.0 41.0 32.0 41.0 43 36.773465864235696 39.0 35.0 41.0 32.0 41.0 44 36.79567962380165 39.0 35.0 41.0 32.0 41.0 45 36.8147206004112 39.0 35.0 41.0 32.0 41.0 46 36.635048661462136 39.0 35.0 40.0 32.0 41.0 47 36.62253510278918 39.0 35.0 41.0 32.0 41.0 48 36.60901173052525 39.0 35.0 40.0 32.0 41.0 49 36.58203130850019 39.0 35.0 40.0 32.0 41.0 50 36.4732624039126 39.0 35.0 40.0 32.0 41.0 51 35.55819585676907 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 11.0 10 18.0 11 12.0 12 20.0 13 31.0 14 44.0 15 52.0 16 68.0 17 111.0 18 195.0 19 360.0 20 564.0 21 869.0 22 1207.0 23 1647.0 24 2284.0 25 3179.0 26 3882.0 27 4683.0 28 5186.0 29 6100.0 30 7998.0 31 11373.0 32 16960.0 33 28536.0 34 39127.0 35 38248.0 36 56480.0 37 91073.0 38 112568.0 39 34525.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.10665942111152 21.69751376191933 23.01711762402843 13.178709192940719 2 33.179864488150734 23.424466157338372 24.643516547464447 18.752152807046446 3 33.21773249781243 22.090314133325347 26.18583565283807 18.50611771602416 4 29.053962983485697 25.72949404488108 25.765008675411256 19.45153429622197 5 26.510601972987484 28.81948084456359 23.957399558848387 20.71251762360054 6 27.020215526739737 34.14111289159693 23.68376574892012 15.154905832743207 7 79.02048081675093 6.115148701469578 9.886117844390293 4.978252637389204 8 78.97533872613727 7.623022894100079 8.631338880176633 4.770299499586019 9 71.99179312513773 9.026706574271575 11.009749407911205 7.971750892679494 10 43.97716794355313 24.381435689636362 18.254947979624013 13.386448387186492 11 34.39570572491565 24.912443599129677 22.73556790247597 17.9562827734787 12 31.17564124232745 23.410345882549265 26.48899367368901 18.925019201434278 13 26.13021032791129 26.991974977161526 27.107718441720706 19.77009625320648 14 19.265189457717266 29.05909762886355 28.966887955619548 22.708824957799635 15 19.669542781223456 26.66742260056952 33.26159092708162 20.401443691125408 16 21.82288468656199 25.2453397744607 31.9255134110519 21.00626212792541 17 22.10785750503302 26.39400273419866 27.941670428507553 23.55646933226076 18 22.859227278659343 27.023638623658307 27.88091045820292 22.236223639479434 19 25.927391835485963 26.965445976042602 25.823629210141778 21.28353297832966 20 27.26881794045095 25.65226042065582 28.12523400076592 18.95368763812731 21 26.08314274528094 27.153716306564 26.318052771317873 20.445088176837185 22 23.72056404079476 25.0731152107451 27.614978616341435 23.591342132118704 23 24.13711214707336 27.142591241578646 27.202281494096226 21.518015117251764 24 23.84978594947081 25.59257016813824 28.365064728623295 22.192579153767653 25 22.224456743821843 28.18406847905386 26.9314289504143 22.66004582671 26 21.640176888533265 28.634205723845934 27.586952010320637 22.13866537730016 27 23.498276684645056 28.174013131855553 28.14448892093288 20.18322126256651 28 20.206755053881682 28.866334483636525 30.40095162094336 20.525958841538426 29 22.117057078001682 25.918406206074714 29.15900927017434 22.805527445749263 30 21.86246424468297 27.679589570679465 28.459413837441407 21.99853234719616 31 23.318991983534904 28.300667717842682 25.304602139863462 23.075738158758956 32 23.612950431417186 28.6395543127812 25.87797087372409 21.869524382077522 33 23.882305370197233 28.490221709708546 26.356562611651796 21.270910308442424 34 21.67248236570228 27.97739900259514 26.27226885003198 24.077849781670597 35 22.92020119252139 25.734200803144113 26.64003782522095 24.705560179113547 36 23.298881289138297 27.70012815219089 26.75043270084486 22.250557857825946 37 22.302332198719334 28.50070494402167 27.69777477305937 21.499188084199627 38 22.08197033458633 26.672771189504786 27.44467954464253 23.800578931266354 39 22.9925141149262 27.010802010213663 27.63808452054179 22.358599354318343 40 22.53531673273957 26.159306651719145 28.735828913616007 22.569547701925277 41 20.840883758046953 26.960953161336974 27.73136391157285 24.466799169043224 42 21.927717029693223 26.40106287159322 27.276947795632555 24.394272303081003 43 23.814913149612867 25.390393506385145 27.36979929954879 23.424894044453193 44 21.824168347906454 27.345409734003972 26.967585411616707 23.862836506472863 45 21.91744773893751 26.939986692710725 25.577808062676905 25.56475750567485 46 21.597602120608542 28.78653353672234 26.95881372576287 22.65705061690625 47 21.998960234310985 26.33024755409028 29.486128969455276 22.184663242143458 48 22.34447907952924 25.106918292815987 29.140610124237025 23.40799250341775 49 21.884500431096267 25.00165806256993 29.301923566524678 23.811917939809117 50 20.637637378506803 26.870241092994846 28.86226955604572 23.629851972452627 51 20.775630973036694 25.83368455734008 26.428661590499196 26.96202287912403 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 174.0 1 550.0 2 926.0 3 2044.0 4 3162.0 5 2295.5 6 1429.0 7 1464.5 8 1500.0 9 1501.0 10 1502.0 11 1492.0 12 1482.0 13 1411.0 14 1340.0 15 1252.5 16 1165.0 17 1113.0 18 1061.0 19 1179.5 20 1298.0 21 1333.5 22 1369.0 23 1595.0 24 1821.0 25 2249.5 26 3622.0 27 4566.0 28 5391.5 29 6217.0 30 7134.0 31 8051.0 32 8668.0 33 9285.0 34 10543.0 35 11801.0 36 12911.5 37 14022.0 38 15383.5 39 16745.0 40 19274.0 41 21803.0 42 24089.5 43 26376.0 44 28488.0 45 30600.0 46 36257.0 47 41914.0 48 39458.5 49 37003.0 50 36890.5 51 36778.0 52 33709.5 53 30641.0 54 28723.0 55 26805.0 56 25712.5 57 24620.0 58 24171.0 59 23722.0 60 22777.0 61 21832.0 62 19728.0 63 17624.0 64 15143.0 65 12662.0 66 10703.0 67 8744.0 68 7219.5 69 5695.0 70 4344.0 71 2993.0 72 2667.5 73 2342.0 74 1984.5 75 1314.5 76 1002.0 77 748.5 78 495.0 79 409.5 80 324.0 81 230.5 82 137.0 83 99.5 84 62.0 85 36.0 86 10.0 87 8.5 88 7.0 89 3.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 467413.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.758911434471038 #Duplication Level Percentage of deduplicated Percentage of total 1 75.04665727946545 18.580735410353867 2 10.091860359186223 4.997269536842815 3 3.445245725134992 2.559016013358216 4 1.6608823657732104 1.6448655758901458 5 0.9012250328171049 1.1156675385023478 6 0.5635145468168125 0.8371204054004125 7 0.3696083888847126 0.640577095608389 8 0.3237306095975918 0.6412173993323277 9 0.24409616701995077 0.543919984266673 >10 5.722409635671031 39.05143444334031 >50 1.5571948149944808 24.519257665954868 >100 0.06665036173128126 2.910764422856385 >500 0.0025967673401797895 0.3396820505247659 >1k 0.0043279455669663165 1.6184724577684744 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG 1783 0.38146136286324944 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1570 0.33589138513477373 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC 1566 0.335035610905131 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC 1486 0.31792012631227634 No Hit GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC 1147 0.24539326035005446 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 568 0.12151994060926846 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 512 0.10953910139427016 No Hit CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC 505 0.10804149649239538 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10076741554043213 0.0 2 0.0 0.0 0.0 0.5973304122906294 0.0 3 0.0 0.0 0.0 0.7774708876304254 0.0 4 0.0 0.0 0.0 1.1165714261263593 0.0 5 0.0 0.0 0.0 2.123389807301038 0.0 6 0.0 0.0 0.0 2.5134089124607146 0.0 7 0.0 0.0 0.0 2.9479282775618136 0.0 8 0.0 0.0 0.0 3.49733533299245 0.0 9 0.0 0.0 0.0 3.70379086589376 0.0 10 0.0 0.0 0.0 4.574327200997833 0.0 11 0.0 0.0 0.0 5.392447364536288 0.0 12 0.0 0.0 0.0 6.279457353560984 0.0 13 0.0 0.0 0.0 6.568709043180228 0.0 14 0.0 0.0 0.0 6.683168846394944 0.0 15 0.0 0.0 0.0 6.959369979012137 0.0 16 0.0 0.0 0.0 7.416353417641358 0.0 17 0.0 0.0 0.0 7.878471501648435 0.0 18 0.0 0.0 0.0 8.393861531450773 0.0 19 0.0 0.0 0.0 8.789657112660539 0.0 20 0.0 0.0 0.0 9.1433058130604 0.0 21 0.0 0.0 0.0 9.511930562479007 0.0 22 0.0 0.0 0.0 9.950300911613498 0.0 23 0.0 0.0 0.0 10.349733533299245 0.0 24 0.0 0.0 0.0 10.678350837482055 0.0 25 0.0 0.0 0.0 10.970383793347638 0.0 26 0.0 0.0 0.0 11.242947885488851 0.0 27 0.0 0.0 0.0 11.53391112356738 0.0 28 0.0 0.0 0.0 11.830222950581177 0.0 29 0.0 0.0 0.0 12.110916897903994 0.0 30 0.0 0.0 0.0 12.4534405333185 0.0 31 0.0 0.0 0.0 12.777565022795686 0.0 32 0.0 0.0 0.0 13.116879504849031 0.0 33 0.0 0.0 0.0 13.437366953850235 0.0 34 0.0 0.0 0.0 13.746515394308673 0.0 35 0.0 0.0 0.0 14.082620723000858 0.0 36 0.0 0.0 0.0 14.397973526624206 0.0 37 0.0 0.0 0.0 14.723809564560678 0.0 38 0.0 0.0 0.0 15.070398127565985 0.0 39 0.0 0.0 0.0 15.401796697995135 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGGTC 125 0.0 45.000004 5 TGTAGCG 35 1.2098644E-7 45.000004 1 TAGTGCG 35 1.2098644E-7 45.000004 1 AGCCGAT 20 7.028987E-4 45.0 44 ACACGAA 20 7.028987E-4 45.0 45 CCGATTC 20 7.028987E-4 45.0 45 CGGCATG 25 3.887241E-5 45.0 31 CACGCTT 20 7.028987E-4 45.0 29 TTCACGC 20 7.028987E-4 45.0 27 ATAGAGT 25 3.887241E-5 45.0 11 CGATTGC 25 3.887241E-5 45.0 10 CGCGAGG 110 0.0 45.0 2 AAACGTC 20 7.028987E-4 45.0 11 AGACGGC 25 3.887241E-5 45.0 12 GCCGATT 25 3.887241E-5 45.0 14 TACGATC 20 7.028987E-4 45.0 13 CTTGCGT 20 7.028987E-4 45.0 25 ACGGACC 20 7.028987E-4 45.0 20 CGAATAT 80 0.0 45.0 14 ACGCTTC 20 7.028987E-4 45.0 30 >>END_MODULE