SRR3551858_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551858_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	377049
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC	1963	0.5206219881235595	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG	1740	0.46147848157666504	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC	1644	0.4360175998345043	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1629	0.43203933706229164	No Hit
GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	839	0.22251749772575977	No Hit
CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	587	0.1556826831525876	No Hit
GAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT	558	0.14799137512630983	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCACATT	425	0.1127174452126912	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC	406	0.10767831236788852	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	396	0.10502613718641343	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCGAA	30	2.161607E-6	45.000004	2
GCGCCCA	30	2.161607E-6	45.000004	1
TATAGCG	45	3.8380676E-10	45.000004	1
GTACCGG	20	7.02725E-4	45.0	1
CGAACGG	25	3.885802E-5	45.0	2
GCGACAT	25	3.885802E-5	45.0	12
CTCGTAG	25	3.885802E-5	45.0	1
GGTAACG	25	3.885802E-5	45.0	9
TAAAGCG	20	7.02725E-4	45.0	27
TAGCGTG	35	1.2090277E-7	45.0	1
CGTGACT	25	3.885802E-5	45.0	15
TAGCGCG	20	7.02725E-4	45.0	1
CCCAGTA	20	7.02725E-4	45.0	29
CACGCAT	20	7.02725E-4	45.0	22
GCGCCTT	25	3.885802E-5	45.0	10
TAACGGA	20	7.02725E-4	45.0	34
CTGGTAA	20	7.02725E-4	45.0	10
AATGCGT	20	7.02725E-4	45.0	14
CGATGGA	20	7.02725E-4	45.0	10
CCGCGCA	20	7.02725E-4	45.0	21