##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551858_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 377049 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.545576304406058 28.0 25.0 31.0 16.0 33.0 2 27.712459123350015 31.0 25.0 33.0 16.0 34.0 3 27.584085888041077 31.0 25.0 33.0 16.0 34.0 4 31.545990043734367 35.0 28.0 37.0 19.0 37.0 5 33.11869544807173 35.0 32.0 35.0 28.0 37.0 6 32.891486252449944 35.0 32.0 35.0 28.0 37.0 7 34.09511230635806 35.0 33.0 37.0 31.0 37.0 8 34.348315470933485 35.0 35.0 37.0 31.0 37.0 9 36.63649021745184 39.0 37.0 39.0 32.0 39.0 10 35.47493827062265 37.0 34.0 39.0 31.0 39.0 11 35.89396868841981 37.0 35.0 39.0 31.0 39.0 12 35.86648419701418 37.0 35.0 39.0 31.0 39.0 13 35.9632912433132 37.0 35.0 39.0 31.0 39.0 14 36.760622624645606 39.0 36.0 40.0 31.0 41.0 15 37.14865972327204 39.0 36.0 40.0 32.0 41.0 16 36.68301732666046 38.0 35.0 40.0 31.0 41.0 17 36.92977835772008 38.0 35.0 40.0 32.0 41.0 18 36.79446172778604 38.0 35.0 40.0 32.0 41.0 19 36.3031011884397 38.0 34.0 40.0 30.0 41.0 20 36.81421512853767 38.0 35.0 40.0 32.0 41.0 21 36.80075533949169 38.0 35.0 40.0 32.0 41.0 22 37.20184909653653 39.0 35.0 40.0 32.0 41.0 23 37.577012536832086 39.0 35.0 40.0 33.0 41.0 24 37.63716121777276 39.0 35.0 41.0 33.0 41.0 25 36.51209259273993 38.0 35.0 40.0 31.0 41.0 26 36.877909767695975 38.0 35.0 40.0 32.0 41.0 27 37.281016525703556 39.0 35.0 40.0 33.0 41.0 28 37.36617256643036 39.0 35.0 40.0 33.0 41.0 29 37.507865025500664 39.0 35.0 41.0 33.0 41.0 30 37.06877090245565 39.0 35.0 40.0 32.0 41.0 31 37.20383557574745 39.0 35.0 40.0 33.0 41.0 32 37.14563889574034 39.0 35.0 40.0 33.0 41.0 33 37.240647767266324 39.0 35.0 41.0 33.0 41.0 34 37.24977920641614 40.0 35.0 41.0 33.0 41.0 35 37.18145652156616 40.0 35.0 41.0 33.0 41.0 36 37.073637643913656 40.0 35.0 41.0 33.0 41.0 37 37.1235674938801 40.0 35.0 41.0 33.0 41.0 38 36.955178239433074 39.0 35.0 41.0 32.0 41.0 39 36.93919357961432 39.0 35.0 41.0 32.0 41.0 40 36.80291155791422 39.0 35.0 41.0 32.0 41.0 41 36.68312341366772 39.0 35.0 41.0 31.0 41.0 42 36.81005121350275 39.0 35.0 41.0 32.0 41.0 43 36.79052059546637 39.0 35.0 41.0 32.0 41.0 44 36.82075008818482 39.0 35.0 41.0 32.0 41.0 45 36.79637129391671 39.0 35.0 41.0 32.0 41.0 46 36.645931961097894 39.0 35.0 40.0 32.0 41.0 47 36.599187373524394 39.0 35.0 41.0 32.0 41.0 48 36.6246429509162 39.0 35.0 41.0 32.0 41.0 49 36.623595341719515 39.0 35.0 40.0 32.0 41.0 50 36.54992852387886 39.0 35.0 41.0 32.0 41.0 51 35.63246421552636 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 5.0 10 14.0 11 11.0 12 18.0 13 10.0 14 23.0 15 39.0 16 45.0 17 90.0 18 138.0 19 260.0 20 410.0 21 659.0 22 968.0 23 1434.0 24 2023.0 25 2717.0 26 3474.0 27 3867.0 28 4203.0 29 5063.0 30 6361.0 31 9014.0 32 13899.0 33 23459.0 34 32894.0 35 30176.0 36 43550.0 37 72215.0 38 91493.0 39 28513.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.50122663102143 22.575049927197792 25.729281870526112 14.194441571254664 2 32.82782874374418 24.528111730836045 24.564446530822252 18.079612994597518 3 32.67957215109972 22.140358414954026 27.4073131078454 17.772756326100854 4 29.190900917387395 24.72251617163817 27.406517455290956 18.68006545568348 5 27.754748056618634 28.2106569703142 24.600516113290315 19.434078859776847 6 25.785507984373385 33.60438563688008 25.15641203132749 15.453694347419036 7 78.82344204599401 6.174263822474002 10.861983455731218 4.140310675800758 8 80.60702985553601 6.2023768793976375 8.8465955353283 4.343997729738044 9 75.04700980509165 6.388824794655338 10.659092054348374 7.905073345904643 10 45.5951348498471 20.774488196494357 18.830709005991263 14.799667947667281 11 33.68925524268729 24.919042352585475 24.64799004903872 16.743712355688515 12 30.354675387018666 22.69970216072712 28.371378786311592 18.57424366594262 13 23.94092014565746 27.42667398667017 29.626122864667458 19.006283003004913 14 20.09579656755488 29.887362120042756 29.279218350930513 20.737622961471853 15 18.810287257093904 26.98057812114606 35.68263010908396 18.52650451267607 16 21.428249378727966 25.75076448949606 32.15364581261321 20.66734031916276 17 20.778731676784716 26.552782264374127 29.51367063697291 23.154815421868243 18 22.20268453171869 26.46419961331286 31.31821063044856 20.01490522451989 19 24.145668069667337 27.053247721118474 28.18519608857204 20.615888120642147 20 24.85883797596599 26.828608483247535 30.066649162310473 18.24590437847601 21 23.49906776042371 27.986548167479558 29.355335778638853 19.15904829345788 22 22.475858575410623 25.015581529191167 29.98177955650327 22.526780338894945 23 21.779132155237118 26.637121435145033 29.71046203543837 21.873284374179484 24 21.825014785876636 25.40916432612207 32.04702837031792 20.71879251768338 25 19.888926903399824 28.971300812361257 29.694814201867665 21.444958082371258 26 19.806444255255947 29.894522993032734 29.186922654615184 21.112110097096135 27 20.640288132311717 29.47017496399672 29.377348832645094 20.51218807104647 28 18.367639219305715 28.047282979135336 32.57905471172182 21.006023089837132 29 20.377192354309386 27.039456410174807 30.332397115494274 22.250954120021536 30 20.436335860856282 29.452405390280838 28.551991916170046 21.559266832692835 31 23.450532954602718 27.817339390901445 26.467647441048776 22.264480213447058 32 22.936276186914696 28.895183384652924 26.58248662640665 21.58605380202573 33 22.47081944256582 28.526531034427887 26.306925625051385 22.69572389795491 34 20.969423072332773 28.25972221117149 27.25481303491058 23.51604168158515 35 20.235300982100473 27.86932202445836 27.893191601091633 24.002185392349535 36 21.946749626706342 28.32947441844429 28.420709244687032 21.303066710162337 37 20.28197926529443 28.65701805335646 28.73499200369183 22.326010677657283 38 20.743457746871098 29.726375086527216 26.30215170972473 23.228015456876957 39 21.116353577386494 27.975409031717362 28.066643857960106 22.841593532936038 40 20.565496792194118 29.04715302255145 28.288365703131426 22.09898448212301 41 18.896748168009996 27.598269720911606 28.714835472312615 24.790146638765783 42 20.63020986662211 27.037069452511474 29.326427069160772 23.00629361170564 43 21.24233189850656 25.99768199889139 28.992518213813057 23.76746788878899 44 20.666014231572024 27.28292609183422 27.666695840593665 24.384363836000094 45 20.760696885550683 28.144352590777327 27.363021782314767 23.731928741357226 46 22.399741147702287 28.483300578969846 27.52878273115696 21.588175542170912 47 19.163822208784534 27.50623924211442 30.705027728491523 22.62491082060952 48 20.656996835955006 26.49469962789982 29.61312720627823 23.235176329866942 49 20.156796596728807 25.465390439969344 31.525345512121767 22.852467451180086 50 20.233709676991584 26.673986670167537 29.850762102538397 23.24154155030248 51 20.02047479240099 26.71801277818002 27.269134780890546 25.992377648528443 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 147.0 1 417.0 2 687.0 3 1890.0 4 3093.0 5 2213.0 6 1333.0 7 1336.0 8 1339.0 9 1412.5 10 1486.0 11 1421.0 12 1356.0 13 1267.0 14 1178.0 15 1069.5 16 961.0 17 948.0 18 935.0 19 1039.0 20 1143.0 21 1204.5 22 1266.0 23 1395.5 24 1525.0 25 1862.0 26 2920.5 27 3642.0 28 4456.5 29 5271.0 30 6345.5 31 7420.0 32 7959.0 33 8498.0 34 10093.0 35 11688.0 36 12206.0 37 12724.0 38 13799.5 39 14875.0 40 16199.0 41 17523.0 42 20273.5 43 23024.0 44 25680.0 45 28336.0 46 33910.0 47 39484.0 48 37482.0 49 35480.0 50 33918.5 51 32357.0 52 29491.5 53 26626.0 54 24732.0 55 22838.0 56 19919.0 57 17000.0 58 15146.0 59 13292.0 60 12549.0 61 11806.0 62 10380.0 63 8954.0 64 7582.0 65 6210.0 66 5124.5 67 4039.0 68 3345.5 69 2652.0 70 2249.5 71 1847.0 72 1546.5 73 1246.0 74 949.5 75 485.5 76 318.0 77 335.0 78 352.0 79 223.0 80 94.0 81 76.0 82 58.0 83 59.0 84 60.0 85 38.5 86 17.0 87 12.0 88 7.0 89 5.5 90 4.0 91 3.5 92 3.0 93 2.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 377049.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.756448469291012 #Duplication Level Percentage of deduplicated Percentage of total 1 73.80887342858198 19.748633184682767 2 10.616464543811118 5.681177729850746 3 3.6336197367057745 2.916682777265005 4 1.7487167657219231 1.8715780011769556 5 0.9968363135784617 1.3335899728290064 6 0.6168986476382037 0.9903610125784147 7 0.47592180757348446 0.891378412382624 8 0.40193396348533367 0.8603460305642581 9 0.3099490763179212 0.7463822839744325 >10 6.426944072810245 45.28132778936833 >50 0.9178492001928754 15.168146637654978 >100 0.038993593472246346 2.1134122019343256 >500 0.0029995071901727957 0.5307607352705952 >1k 0.003999342920230394 1.8662232304675765 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC 1963 0.5206219881235595 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG 1740 0.46147848157666504 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC 1644 0.4360175998345043 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1629 0.43203933706229164 No Hit GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC 839 0.22251749772575977 No Hit CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC 587 0.1556826831525876 No Hit GAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT 558 0.14799137512630983 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCACATT 425 0.1127174452126912 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC 406 0.10767831236788852 No Hit GAATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT 396 0.10502613718641343 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6521751814750867E-4 0.0 0.0 0.09335656638792306 0.0 2 2.6521751814750867E-4 0.0 0.0 0.6572090099695265 0.0 3 2.6521751814750867E-4 0.0 0.0 0.8834395529493514 0.0 4 2.6521751814750867E-4 0.0 0.0 1.3984919731918133 0.0 5 2.6521751814750867E-4 0.0 0.0 2.8205883054987546 0.0 6 2.6521751814750867E-4 0.0 0.0 3.4000885826510614 0.0 7 2.6521751814750867E-4 0.0 0.0 3.9785279897307775 0.0 8 2.6521751814750867E-4 0.0 0.0 4.74155878944116 0.0 9 2.6521751814750867E-4 0.0 0.0 4.998289347007948 0.0 10 2.6521751814750867E-4 0.0 0.0 6.0917811743301264 0.0 11 2.6521751814750867E-4 0.0 0.0 7.226116499447022 0.0 12 2.6521751814750867E-4 0.0 0.0 8.42702142161894 0.0 13 2.6521751814750867E-4 0.0 0.0 8.802569427315813 0.0 14 2.6521751814750867E-4 0.0 0.0 8.957721675432106 0.0 15 2.6521751814750867E-4 0.0 0.0 9.294547923479442 0.0 16 2.6521751814750867E-4 0.0 0.0 9.852035146625505 0.0 17 2.6521751814750867E-4 0.0 0.0 10.490413712806559 0.0 18 2.6521751814750867E-4 0.0 0.0 11.143644460003872 0.0 19 2.6521751814750867E-4 0.0 0.0 11.651536007256352 0.0 20 2.6521751814750867E-4 0.0 0.0 12.06474490053017 0.0 21 2.6521751814750867E-4 0.0 0.0 12.562823399611192 0.0 22 2.6521751814750867E-4 0.0 0.0 13.055597548329262 0.0 23 2.6521751814750867E-4 0.0 0.0 13.582054321852066 0.0 24 2.6521751814750867E-4 0.0 0.0 14.024702359640258 0.0 25 2.6521751814750867E-4 0.0 0.0 14.412715588690064 0.0 26 2.6521751814750867E-4 0.0 0.0 14.756702709727383 0.0 27 2.6521751814750867E-4 0.0 0.0 15.120846362143912 0.0 28 2.6521751814750867E-4 0.0 0.0 15.503555240830767 0.0 29 2.6521751814750867E-4 0.0 0.0 15.861333672811757 0.0 30 2.6521751814750867E-4 0.0 0.0 16.28249909163 0.0 31 2.6521751814750867E-4 0.0 0.0 16.67873406374238 0.0 32 2.6521751814750867E-4 0.0 0.0 17.078416863590675 0.0 33 2.6521751814750867E-4 0.0 0.0 17.4693474853401 0.0 34 2.6521751814750867E-4 0.0 0.0 17.846752013664005 0.0 35 2.6521751814750867E-4 0.0 0.0 18.27216091277261 0.0 36 2.6521751814750867E-4 0.0 0.0 18.675556757874972 0.0 37 2.6521751814750867E-4 0.0 0.0 19.048717805908517 0.0 38 2.6521751814750867E-4 0.0 0.0 19.43567016488573 0.0 39 2.6521751814750867E-4 0.0 0.0 19.82209208882665 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGGCGAA 30 2.161607E-6 45.000004 2 GCGCCCA 30 2.161607E-6 45.000004 1 TATAGCG 45 3.8380676E-10 45.000004 1 GTACCGG 20 7.02725E-4 45.0 1 CGAACGG 25 3.885802E-5 45.0 2 GCGACAT 25 3.885802E-5 45.0 12 CTCGTAG 25 3.885802E-5 45.0 1 GGTAACG 25 3.885802E-5 45.0 9 TAAAGCG 20 7.02725E-4 45.0 27 TAGCGTG 35 1.2090277E-7 45.0 1 CGTGACT 25 3.885802E-5 45.0 15 TAGCGCG 20 7.02725E-4 45.0 1 CCCAGTA 20 7.02725E-4 45.0 29 CACGCAT 20 7.02725E-4 45.0 22 GCGCCTT 25 3.885802E-5 45.0 10 TAACGGA 20 7.02725E-4 45.0 34 CTGGTAA 20 7.02725E-4 45.0 10 AATGCGT 20 7.02725E-4 45.0 14 CGATGGA 20 7.02725E-4 45.0 10 CCGCGCA 20 7.02725E-4 45.0 21 >>END_MODULE