##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551852_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 361872 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.247236591944112 28.0 25.0 31.0 16.0 33.0 2 27.877462196577795 31.0 25.0 33.0 16.0 34.0 3 27.679834306052967 31.0 25.0 33.0 16.0 34.0 4 31.612619931909627 35.0 28.0 37.0 19.0 37.0 5 33.18684507229076 35.0 32.0 35.0 28.0 37.0 6 32.86839545474643 35.0 32.0 35.0 28.0 37.0 7 34.06440951496662 35.0 33.0 37.0 31.0 37.0 8 34.26077729141796 35.0 35.0 37.0 31.0 37.0 9 36.49367455896007 39.0 37.0 39.0 32.0 39.0 10 35.4681268514834 37.0 34.0 39.0 31.0 39.0 11 35.93533625149224 37.0 35.0 39.0 31.0 39.0 12 35.80620219304063 37.0 35.0 39.0 31.0 39.0 13 35.91890779059999 37.0 35.0 39.0 31.0 39.0 14 36.67023422646682 38.0 35.0 40.0 31.0 41.0 15 37.07355915903966 39.0 35.0 40.0 32.0 41.0 16 36.62291362691781 38.0 35.0 40.0 31.0 41.0 17 36.91552261573153 38.0 35.0 40.0 32.0 41.0 18 36.68376939912455 38.0 35.0 40.0 32.0 41.0 19 36.197895941106246 38.0 34.0 40.0 30.0 41.0 20 36.805527921475 38.0 35.0 40.0 32.0 41.0 21 36.75341004554097 38.0 35.0 40.0 32.0 41.0 22 37.162601693416455 39.0 35.0 40.0 32.0 41.0 23 37.55425951717734 39.0 35.0 40.0 33.0 41.0 24 37.639516182517575 39.0 35.0 41.0 33.0 41.0 25 36.5926819427864 38.0 35.0 40.0 31.0 41.0 26 36.87183589777601 38.0 35.0 40.0 32.0 41.0 27 37.229921077065924 39.0 35.0 40.0 33.0 41.0 28 37.33048978644383 39.0 35.0 40.0 33.0 41.0 29 37.41579895653712 39.0 35.0 41.0 33.0 41.0 30 37.002879471194234 39.0 35.0 40.0 32.0 41.0 31 37.07363929787328 39.0 35.0 40.0 33.0 41.0 32 37.02039118804439 39.0 35.0 40.0 33.0 41.0 33 37.164411725693064 39.0 35.0 41.0 33.0 41.0 34 37.15150384666401 39.0 35.0 41.0 33.0 41.0 35 37.08034885263297 39.0 35.0 41.0 33.0 41.0 36 36.97358181898572 39.0 35.0 41.0 33.0 41.0 37 37.012656408895964 39.0 35.0 41.0 33.0 41.0 38 36.84570511119954 39.0 35.0 41.0 32.0 41.0 39 36.78712086041473 39.0 35.0 41.0 32.0 41.0 40 36.657337401069995 39.0 35.0 40.0 32.0 41.0 41 36.5308645045762 39.0 35.0 40.0 31.0 41.0 42 36.660675598001504 39.0 35.0 40.0 32.0 41.0 43 36.626069438917625 39.0 35.0 40.0 32.0 41.0 44 36.62761418402087 39.0 35.0 40.0 32.0 41.0 45 36.62243003050803 39.0 35.0 40.0 32.0 41.0 46 36.486882101958706 39.0 35.0 40.0 32.0 41.0 47 36.46725361453774 39.0 35.0 40.0 32.0 41.0 48 36.43985442366362 39.0 35.0 40.0 32.0 41.0 49 36.41757859132511 38.0 35.0 40.0 32.0 41.0 50 36.30984160145024 38.0 35.0 40.0 31.0 41.0 51 35.376763054339655 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 16.0 10 13.0 11 27.0 12 21.0 13 18.0 14 32.0 15 39.0 16 51.0 17 76.0 18 137.0 19 267.0 20 399.0 21 595.0 22 852.0 23 1313.0 24 1781.0 25 2603.0 26 3273.0 27 3801.0 28 4143.0 29 4970.0 30 6617.0 31 9008.0 32 14030.0 33 23972.0 34 33117.0 35 29866.0 36 42870.0 37 68907.0 38 83529.0 39 25525.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.00214440465137 20.484591236680373 23.291384799044966 14.221879559623293 2 34.88747402396427 21.76598355219525 25.220519962859793 18.12602246098068 3 33.101207056638806 20.481551487818898 28.116018923818366 18.301222531723923 4 29.86415085997259 25.04725427775567 25.612371225184592 19.47622363708715 5 26.075794756156874 28.838926471238445 24.606767033647255 20.478511738957422 6 26.565747004465667 33.361243754697796 24.36413980634036 15.708869434496176 7 78.2304240173321 6.117356413317416 10.492936729009154 5.159282840341336 8 78.98870318786754 5.8692023698987486 9.87752575496308 5.2645686872706365 9 72.38692134235309 7.982104169430075 12.180550028739443 7.450424459477384 10 44.30240527037184 22.660498739885927 19.644515187690676 13.392580802051555 11 35.31524959101561 24.03943935977362 23.222299597647787 17.423011451562985 12 31.88834726090993 21.945881416633505 27.43235177079188 18.733419551664674 13 24.801587301587304 26.923332006897464 28.871534686297917 19.403546005217315 14 19.57487730468232 29.733994340540303 29.79368395454746 20.897444400229915 15 20.118439669275322 26.237177786620684 34.82971879559623 18.81466374850776 16 22.208405181942787 23.674393155590927 34.58930229473405 19.52789936773224 17 22.86609629924393 24.10880090197639 28.94587036300128 24.079232435778398 18 22.473692355307954 26.900119379228016 30.180561082371664 20.445627183092363 19 25.722354865808907 26.648096564531105 27.16623557500995 20.463312994650042 20 27.87670778617854 26.230545607286555 27.708968917186187 18.18377768934872 21 25.74888358314542 26.034067294512976 28.02482645797409 20.192222664367513 22 22.42063492063492 25.32746385462263 28.781171242870407 23.470729981872044 23 22.88129504355131 25.959178936198434 29.140137949330146 22.019388070920105 24 23.670248043507097 24.17595171773445 30.385882300924084 21.767917937834373 25 22.333863907680062 25.590816642348674 28.80659459698457 23.26872485298669 26 20.415229694477606 28.206382367245876 29.05861741168148 22.31977052659504 27 21.717900252022815 28.233463766193573 28.418059424326835 21.63057655745678 28 20.294745103240924 27.84354688950789 30.048470177300263 21.81323782995092 29 21.15886280231684 26.7315514878189 29.947053101649203 22.16253260821506 30 23.006477428483 26.23551974178715 28.056329309811208 22.701673519918643 31 24.598200468674005 27.19138258831852 26.2098200468674 22.00059689614007 32 25.766016713091922 26.887407702170936 26.448025821284876 20.89854976345227 33 25.517586328867665 27.401401600565944 25.276617146394305 21.804394924172083 34 21.77233939072379 26.41237785736393 28.70075606844409 23.11452668346819 35 22.152031657602688 26.521256134765885 27.52547862227528 23.801233585356147 36 23.689591899898307 26.520427112349115 27.130311270283414 22.65966971746916 37 22.879084317106603 28.36942344254322 28.430218419772736 20.321273820577442 38 23.680472653313878 27.61722376973073 26.962572401291062 21.739731175664325 39 23.91038820356369 25.77181987000928 28.934540389972145 21.38325153645488 40 23.631560330724678 24.453121545739933 30.100974930362117 21.814343193173276 41 20.40970287836583 26.123878056329307 28.59160145023655 24.874817615068313 42 20.910432418092586 25.961666003448734 28.489355352168722 24.63854622628996 43 22.26781845514436 25.03205553344829 29.46483839589689 23.235287615510455 44 22.310651280010614 25.465910598222575 28.53826767475793 23.68517044700889 45 22.588097448821685 26.39911349869567 27.24361100057479 23.769178051907858 46 22.008610779502146 26.481186717955516 28.412256267409468 23.097946235132866 47 21.027048238051023 26.837390016359375 30.047088473272314 22.088473272317284 48 22.802537913958528 23.93829862492815 30.32867975416722 22.930483706946102 49 21.859663085289828 23.916467701286642 30.594795949949155 23.62907326347438 50 20.19719679886811 25.437723836052527 29.89261396294822 24.472465402131142 51 20.834715037361278 26.061148693460673 27.367411681478533 25.736724587699516 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 183.0 1 452.5 2 722.0 3 1767.0 4 2812.0 5 2008.0 6 1204.0 7 1252.0 8 1300.0 9 1334.0 10 1368.0 11 1386.0 12 1404.0 13 1344.5 14 1285.0 15 1108.5 16 932.0 17 989.0 18 1046.0 19 1125.5 20 1205.0 21 1114.5 22 1024.0 23 1361.0 24 1698.0 25 1892.5 26 2307.0 27 2527.0 28 3221.0 29 3915.0 30 4444.0 31 4973.0 32 5829.0 33 6685.0 34 6912.0 35 7139.0 36 8097.5 37 9056.0 38 11027.0 39 12998.0 40 14371.5 41 15745.0 42 18374.0 43 21003.0 44 23383.5 45 25764.0 46 28533.0 47 31302.0 48 32529.5 49 33757.0 50 33049.0 51 32341.0 52 28883.0 53 25425.0 54 23358.0 55 21291.0 56 20566.0 57 19841.0 58 19336.0 59 18831.0 60 17385.5 61 15940.0 62 14627.5 63 13315.0 64 11038.0 65 8761.0 66 6976.5 67 5192.0 68 4171.0 69 3150.0 70 2563.5 71 1977.0 72 1510.5 73 1044.0 74 911.5 75 624.0 76 469.0 77 353.5 78 238.0 79 143.0 80 48.0 81 32.5 82 17.0 83 21.5 84 26.0 85 34.5 86 43.0 87 24.0 88 5.0 89 4.5 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 361872.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.44616881107132 #Duplication Level Percentage of deduplicated Percentage of total 1 74.41602899718083 20.424348941062036 2 10.648409182440597 5.84516071981253 3 3.6890857833266213 3.037538135031171 4 1.7579540877970197 1.9299641862315957 5 1.0239629480467176 1.4051929964186232 6 0.6282722513089005 1.0346199761241544 7 0.4510672573499798 0.8666047663262147 8 0.3493757551349174 0.7671220763142769 9 0.2778896496173983 0.6864305610823717 >10 5.596053161498188 40.83018304814962 >50 1.0984695932339912 18.772383605252685 >100 0.05638340716874748 2.679953132599372 >500 0.006041079339508659 1.2819449971260557 >1k 0.0010068465565847764 0.438552858469293 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1587 0.438552858469293 No Hit GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 978 0.2702613078657647 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG 830 0.22936286863863464 No Hit CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 790 0.21830923641508598 No Hit GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC 763 0.21084803466419064 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC 663 0.18321395410531902 No Hit CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT 615 0.16994959543706062 No Hit GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG 406 0.11219436706901888 No Hit GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT 389 0.10749657337401071 No Hit TCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 380 0.10500950612371227 No Hit CGTGAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC 367 0.10141707565105894 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17575275235442367 0.0 2 0.0 0.0 0.0 0.8666047663262147 0.0 3 0.0 0.0 0.0 1.1379714374143344 0.0 4 0.0 0.0 0.0 1.5654706636600788 0.0 5 0.0 0.0 0.0 2.726654728743865 0.0 6 0.0 0.0 0.0 3.2099747977185302 0.0 7 0.0 0.0 0.0 3.7955409647610203 0.0 8 0.0 0.0 0.0 4.672923022505195 0.0 9 0.0 0.0 0.0 4.955066985011275 0.0 10 0.0 0.0 0.0 5.857872396869611 0.0 11 0.0 0.0 0.0 6.954669054251227 0.0 12 0.0 0.0 0.0 7.929875757173807 0.0 13 0.0 0.0 0.0 8.333886014944511 0.0 14 0.0 0.0 0.0 8.46321351196003 0.0 15 0.0 0.0 0.0 8.776583985497634 0.0 16 0.0 0.0 0.0 9.320975372507405 0.0 17 0.0 0.0 0.0 9.994970597338286 0.0 18 0.0 0.0 0.0 10.698534288367158 0.0 19 0.0 0.0 0.0 11.165550249812089 0.0 20 0.0 0.0 0.0 11.598299951364018 0.0 21 0.0 0.0 0.0 12.104832648008136 0.0 22 0.0 0.0 0.0 12.686530043772384 0.0 23 0.0 0.0 0.0 13.225118273864792 0.0 24 0.0 0.0 0.0 13.644050935137287 0.0 25 0.0 0.0 0.0 14.025953928460892 0.0 26 0.0 0.0 0.0 14.37082725383561 0.0 27 0.0 0.0 0.0 14.738360525268604 0.0 28 0.0 0.0 0.0 15.112249635230137 0.0 29 0.0 0.0 0.0 15.494981650970509 0.0 30 0.0 0.0 0.0 15.887109254100897 0.0 31 0.0 0.0 0.0 16.29802803201132 0.0 32 0.0 0.0 0.0 16.703419993809966 0.0 33 0.0 0.0 0.0 17.086428350355927 0.0 34 0.0 0.0 0.0 17.467502321262767 0.0 35 0.0 0.0 0.0 17.869301852588762 0.0 36 0.0 0.0 0.0 18.27054870230358 0.0 37 0.0 0.0 0.0 18.693073794048725 0.0 38 0.0 0.0 0.0 19.104545253570322 0.0 39 0.0 0.0 0.0 19.50966087456338 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGA 30 2.1613632E-6 45.000004 14 GTTGTAG 55 1.8189894E-12 45.000004 1 TTCTAGG 20 7.0268736E-4 45.0 2 TTGTGCG 35 1.2088458E-7 45.0 1 CGTGCGG 25 3.88549E-5 45.0 2 ATAATCG 20 7.0268736E-4 45.0 41 GACCGTT 25 3.88549E-5 45.0 7 ATTACAC 20 7.0268736E-4 45.0 28 TAACGGA 25 3.88549E-5 45.0 35 TAACGAA 20 7.0268736E-4 45.0 35 TCGATCA 20 7.0268736E-4 45.0 17 CCGCTAC 25 3.88549E-5 45.0 20 TAGTTGG 70 0.0 45.0 2 TGTTGCG 45 3.8380676E-10 45.0 1 GCACAAT 20 7.0268736E-4 45.0 10 ACGGCTA 25 3.88549E-5 45.0 5 GTTCGCA 20 7.0268736E-4 45.0 12 ACTACGG 25 3.88549E-5 45.0 2 ACTACGA 20 7.0268736E-4 45.0 31 CTGTTAC 20 7.0268736E-4 45.0 41 >>END_MODULE