SRR3551850_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551850_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	833155
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCG	3196	0.38360209084744135	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTC	2988	0.3586367482641285	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGC	2326	0.27917974446531557	No Hit
GCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGC	1958	0.23501029220253133	TruSeq Adapter, Index 16 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1903	0.22840887950021307	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1783	0.21400579724060947	No Hit
CCTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGC	1188	0.1425905143700752	TruSeq Adapter, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGCT	872	0.10466239775311917	TruSeq Adapter, Index 13 (95% over 22bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	848	0.10178178130119846	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAA	20	7.032169E-4	45.0	39
TCGTTAC	20	7.032169E-4	45.0	17
TCGCAAT	20	7.032169E-4	45.0	34
GCGCGTA	20	7.032169E-4	45.0	1
GACGTAA	20	7.032169E-4	45.0	28
GCGCCGT	20	7.032169E-4	45.0	37
ATTCACG	20	7.032169E-4	45.0	1
CTCGGAA	20	7.032169E-4	45.0	17
GTCACGC	20	7.032169E-4	45.0	22
CGTCGTT	20	7.032169E-4	45.0	20
CGTCGAA	20	7.032169E-4	45.0	17
TCGGTAA	20	7.032169E-4	45.0	30
AATCGGT	20	7.032169E-4	45.0	28
AGTCGAC	20	7.032169E-4	45.0	25
CGTAAGG	135	0.0	41.666668	2
TTGAGCG	65	0.0	41.53846	1
TGCGTCG	65	0.0	41.53846	1
TACGAAT	255	0.0	41.47059	12
CGTTCGG	45	1.9272193E-8	40.0	2
CGAATAT	265	0.0	39.905663	14