SRR3551849_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551849_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458265
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2394	0.5224051585872803	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGC	2170	0.47352514374870436	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCG	2036	0.444284420586342	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTC	1832	0.3997686927869246	No Hit
GCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGC	1317	0.2873883015285915	RNA PCR Primer, Index 40 (96% over 27bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	609	0.13289254034237832	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCAGAACCT	562	0.1226364658003557	No Hit
CCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGC	553	0.12067253663273433	Illumina PCR Primer Index 8 (95% over 23bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	544	0.11870860746511298	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCC	514	0.11216217690637514	No Hit
CTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGCT	486	0.10605217505155315	Illumina PCR Primer Index 8 (95% over 24bp)
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	482	0.10517931764372143	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCT	463	0.10103324495652079	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAA	20	7.028842E-4	45.0	20
ATCTCCG	20	7.028842E-4	45.0	38
CGAACTA	25	3.8871214E-5	45.0	14
TCCGCAA	20	7.028842E-4	45.0	13
CAACGTG	20	7.028842E-4	45.0	23
CGTGCTA	25	3.8871214E-5	45.0	33
GACGTAC	20	7.028842E-4	45.0	32
ATCAGCG	20	7.028842E-4	45.0	20
CCGTGCG	20	7.028842E-4	45.0	36
TCCTCGA	20	7.028842E-4	45.0	27
ATACTCG	50	2.1827873E-11	45.0	44
AGACGTA	20	7.028842E-4	45.0	31
CTAACGG	20	7.028842E-4	45.0	2
CCGTAGG	25	3.8871214E-5	45.0	2
TAACCGT	20	7.028842E-4	45.0	30
ACTACGG	25	3.8871214E-5	45.0	1
GGTATCG	25	3.8871214E-5	45.0	1
GGTGCGT	25	3.8871214E-5	45.0	8
GCGATAT	25	3.8871214E-5	45.0	9
CGTACCT	20	7.028842E-4	45.0	34