SRR3551848_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551848_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	546823
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1572	0.28747876369501646	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1385	0.25328122628345917	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC	1309	0.23938276188090113	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG	1152	0.210671460417722	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC	1072	0.1960414978887135	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	912	0.16678157283069658	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	788	0.14410513091073346	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	759	0.13880176949396789	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	759	0.13880176949396789	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	674	0.12325743430689638	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	627	0.1146623313211039	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	40	6.8030204E-9	45.000004	1
CTATGCG	20	7.030038E-4	45.000004	1
TCGCACC	20	7.030038E-4	45.000004	41
CGATTGA	40	6.8030204E-9	45.000004	10
GTTAAGC	20	7.030038E-4	45.000004	37
TTGCGTA	20	7.030038E-4	45.000004	41
TTGCGAA	20	7.030038E-4	45.000004	1
TCCCGAT	20	7.030038E-4	45.000004	44
GTATACG	20	7.030038E-4	45.000004	1
ACGTATA	20	7.030038E-4	45.000004	40
ACCGTAC	20	7.030038E-4	45.000004	45
CATCCGT	20	7.030038E-4	45.000004	18
CGATATT	20	7.030038E-4	45.000004	10
TGCGTAA	20	7.030038E-4	45.000004	42
CGTATAC	25	3.888114E-5	45.0	17
ATTACGG	25	3.888114E-5	45.0	2
CATCGTA	25	3.888114E-5	45.0	14
CGATAAT	35	1.2103737E-7	45.0	10
CGAAAGG	75	0.0	42.0	2
TAGGGCG	210	0.0	40.714287	5