##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551848_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 546823 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.286001137479587 28.0 25.0 31.0 16.0 33.0 2 27.78136069623992 31.0 25.0 33.0 16.0 34.0 3 27.444555185133034 31.0 25.0 33.0 16.0 34.0 4 31.707230676105432 35.0 28.0 37.0 19.0 37.0 5 33.181354844254905 35.0 32.0 35.0 28.0 37.0 6 32.80614385276406 35.0 32.0 35.0 28.0 37.0 7 34.15388343211606 35.0 33.0 37.0 31.0 37.0 8 34.164724234350054 35.0 35.0 37.0 31.0 37.0 9 36.60465635132392 39.0 37.0 39.0 32.0 39.0 10 35.51899060573531 37.0 34.0 39.0 31.0 39.0 11 36.026108996878335 37.0 35.0 39.0 31.0 39.0 12 35.97646770527209 37.0 35.0 39.0 31.0 39.0 13 36.11466050257579 37.0 35.0 39.0 32.0 39.0 14 36.96546780219559 39.0 36.0 40.0 32.0 41.0 15 37.255751861205546 39.0 36.0 40.0 32.0 41.0 16 36.75193252661282 38.0 35.0 40.0 32.0 41.0 17 37.01453121028194 38.0 35.0 40.0 32.0 41.0 18 36.78397580204198 38.0 35.0 40.0 32.0 41.0 19 36.375114067989095 38.0 34.0 40.0 30.0 41.0 20 36.9820362347597 38.0 35.0 40.0 32.0 41.0 21 36.94234880390913 39.0 35.0 40.0 32.0 41.0 22 37.35053024470441 39.0 35.0 40.0 33.0 41.0 23 37.74363185162292 39.0 36.0 40.0 34.0 41.0 24 37.80551476437531 39.0 36.0 41.0 34.0 41.0 25 36.659944808466356 38.0 35.0 40.0 31.0 41.0 26 37.03318806999705 39.0 35.0 40.0 32.0 41.0 27 37.389811694094796 39.0 35.0 40.0 33.0 41.0 28 37.466461725274904 39.0 35.0 41.0 33.0 41.0 29 37.59082006426211 39.0 36.0 41.0 33.0 41.0 30 37.16478275420017 39.0 35.0 40.0 32.0 41.0 31 37.306678760769024 39.0 35.0 40.0 33.0 41.0 32 37.2980123367159 39.0 35.0 40.0 33.0 41.0 33 37.42983927157417 40.0 35.0 41.0 33.0 41.0 34 37.453722685402774 40.0 35.0 41.0 33.0 41.0 35 37.40210269136448 40.0 35.0 41.0 33.0 41.0 36 37.289583649553876 40.0 35.0 41.0 33.0 41.0 37 37.34080863460388 40.0 35.0 41.0 33.0 41.0 38 37.19622254367501 39.0 35.0 41.0 33.0 41.0 39 37.12899055087295 39.0 35.0 41.0 33.0 41.0 40 37.00453163089336 39.0 35.0 41.0 32.0 41.0 41 36.88437574864261 39.0 35.0 41.0 32.0 41.0 42 36.97341370059416 39.0 35.0 41.0 33.0 41.0 43 36.93858524604854 39.0 35.0 41.0 33.0 41.0 44 36.934872893056806 39.0 35.0 41.0 33.0 41.0 45 36.912476249170204 39.0 35.0 41.0 33.0 41.0 46 36.75498653129075 39.0 35.0 40.0 32.0 41.0 47 36.7544251064787 39.0 35.0 41.0 32.0 41.0 48 36.742090219321426 39.0 35.0 41.0 32.0 41.0 49 36.692172787172446 39.0 35.0 40.0 32.0 41.0 50 36.61192012771957 39.0 35.0 40.0 32.0 41.0 51 35.70201326571852 37.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 22.0 10 30.0 11 33.0 12 21.0 13 33.0 14 49.0 15 69.0 16 85.0 17 122.0 18 213.0 19 368.0 20 568.0 21 832.0 22 1253.0 23 1801.0 24 2529.0 25 3425.0 26 4220.0 27 4838.0 28 5591.0 29 6866.0 30 9015.0 31 12595.0 32 19476.0 33 32903.0 34 45698.0 35 44820.0 36 66527.0 37 107789.0 38 132838.0 39 42186.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.32525515569023 21.39266270804264 24.65093823778444 12.63114389848269 2 32.84408300309241 22.7905556276894 25.014309932098687 19.35105143711951 3 34.19973190593665 22.129281321378215 26.463407720596976 17.207579052088153 4 30.723835683575857 25.34000947290074 24.40881235792935 19.52734248559406 5 27.035439255481208 28.88411789555304 23.79417105717938 20.286271791786373 6 26.89389436801305 35.15122809391704 22.514597959485975 15.44027957858393 7 79.78267190663158 6.662119186647233 8.870329155869449 4.684879750851738 8 80.9521545362942 6.8075044392792545 7.748028155362888 4.492312869063664 9 74.09253085550534 8.976579258736374 10.153011120600269 6.777878765158013 10 44.31854548912536 24.280068687674074 17.49798380828897 13.90340201491159 11 33.76046728100317 26.672981933825024 22.798784981611966 16.767765803559836 12 30.933592771335515 24.02989632842803 26.521561821649787 18.514949078586675 13 26.10076752440918 26.77594029512292 26.762407579783588 20.36088460068432 14 20.84751372930546 29.051265217446964 27.147907092422958 22.953313960824616 15 20.720415929834697 27.39003297227805 31.780301852701882 20.10924924518537 16 23.336070355489802 25.547206317217817 30.632581292301165 20.484142034991212 17 23.37685137603941 26.03987030538218 27.765291511147115 22.81798680743129 18 23.443051956483178 26.86774330999245 27.94304555587457 21.746159177649808 19 26.081565698589852 27.392044592125785 25.798110174590317 20.728279534694042 20 27.93463332742039 26.293517280728864 27.037633749860557 18.734215641990186 21 25.52068951013399 27.819970996099286 26.6131819619877 20.04615753177902 22 24.509210475784666 25.739041700879444 27.513290406584943 22.238457416750943 23 24.715858696506913 26.905598338036256 28.1683469788213 20.21019598663553 24 23.287425730080848 25.347141579633632 29.707967660467833 21.657465029817693 25 22.33574666756885 27.762914142236156 27.701285425082705 22.200053765112294 26 21.666060132803487 29.348619205849058 27.38985009774644 21.59547056360102 27 22.560133717857514 29.032063391627638 27.736397335152326 20.671405555362522 28 21.009357689782618 28.807310592275748 29.68638846573754 20.496943252204094 29 22.511123343385336 26.805748843775774 28.740561388237147 21.942566424601743 30 21.20320469329198 27.813021763898004 28.464237970970498 22.519535571839516 31 24.33675979247398 28.15993475036712 25.518677890286252 21.984627566872643 32 24.482876543232454 28.89691911276592 25.800121794438052 20.82008254956357 33 23.822699484110945 28.52860980609813 24.81077057841386 22.83792013137706 34 21.67758122829508 28.602491116869626 26.303209630904334 23.41671802393096 35 22.666932444319276 27.209170060513184 27.119195790959782 23.00470170420776 36 23.037436245366415 29.659140160527265 25.982447702455826 21.320975891650498 37 23.33186424126271 30.089626807943336 27.07329428352502 19.505214667268934 38 23.002872958891636 29.42542650912635 25.493075455860488 22.078625076121526 39 23.373559634470386 27.716098262143323 25.9255737231243 22.984768380261986 40 22.255830497254138 27.546939320401663 28.14036717548457 22.056863006859622 41 21.05653931893867 27.053360959579244 27.685741089895632 24.204358631586455 42 21.797546921032946 27.278662382525976 27.899887166413993 23.023903530027084 43 23.472494756072805 25.65619953805893 27.486042101374668 23.38526360449359 44 22.256927744443814 27.940668186963606 26.3694102113481 23.432993857244483 45 22.56452270661622 27.450015818646982 25.882781082726954 24.102680392009844 46 22.322762575824353 28.268196473081787 26.17464883518067 23.234392115913195 47 22.01023000129841 27.151747457586822 28.70014611675076 22.13787642436401 48 21.766823999722032 26.08046845140018 28.689356519385615 23.463351029492173 49 21.35700217437818 26.559233975161984 29.712356649226535 22.371407201233307 50 21.065865920050914 26.73150178394106 29.00792395345477 23.19470834255326 51 20.705237343710852 27.227091764611217 26.66237521099149 25.40529568068644 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 204.0 1 705.0 2 1206.0 3 2121.0 4 3036.0 5 2186.5 6 1337.0 7 1401.0 8 1465.0 9 1485.5 10 1506.0 11 1477.0 12 1448.0 13 1414.0 14 1380.0 15 1423.0 16 1466.0 17 1409.0 18 1352.0 19 1439.5 20 1527.0 21 1624.0 22 1721.0 23 1788.5 24 1856.0 25 2594.0 26 4270.0 27 5208.0 28 6890.0 29 8572.0 30 9539.0 31 10506.0 32 10791.5 33 11077.0 34 13459.5 35 15842.0 36 15906.0 37 15970.0 38 17216.0 39 18462.0 40 22464.0 41 26466.0 42 29384.5 43 32303.0 44 34807.0 45 37311.0 46 40798.5 47 44286.0 48 44859.5 49 45433.0 50 44338.5 51 43244.0 52 40070.5 53 36897.0 54 34417.5 55 31938.0 56 30384.5 57 28831.0 58 28238.0 59 27645.0 60 25899.0 61 24153.0 62 22183.0 63 20213.0 64 17454.0 65 14695.0 66 12080.0 67 9465.0 68 8111.5 69 6758.0 70 5348.5 71 3939.0 72 2949.5 73 1960.0 74 1674.0 75 1051.0 76 714.0 77 504.5 78 295.0 79 268.5 80 242.0 81 190.5 82 139.0 83 82.0 84 25.0 85 14.5 86 4.0 87 3.0 88 2.0 89 2.5 90 3.0 91 1.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 546823.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.427380343086536 #Duplication Level Percentage of deduplicated Percentage of total 1 73.93012211315309 17.319890895556703 2 9.958383705195072 4.665976853280006 3 3.421641401753909 2.4048028354962177 4 1.593379441071553 1.4931482478735163 5 0.8793768462256567 1.0300747920716191 6 0.6001302527060182 0.8435687811321915 7 0.4957525837695004 0.8129929035225167 8 0.3641417424906412 0.6824709680098022 9 0.30305130443122685 0.6389728355140972 >10 6.904325869317445 43.75677250905445 >50 1.4706047102100583 21.417551633610472 >100 0.06969319446682386 2.815998848586437 >500 0.005481487205255808 0.9271699140557558 >1k 0.003915348003754149 1.1906079822362199 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 1572 0.28747876369501646 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1385 0.25328122628345917 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC 1309 0.23938276188090113 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG 1152 0.210671460417722 No Hit GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC 1072 0.1960414978887135 No Hit GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT 912 0.16678157283069658 No Hit GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 788 0.14410513091073346 No Hit GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA 759 0.13880176949396789 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 759 0.13880176949396789 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 674 0.12325743430689638 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 627 0.1146623313211039 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07936754671987097 0.0 2 0.0 0.0 0.0 0.40177534595289516 0.0 3 0.0 0.0 0.0 0.521558164159152 0.0 4 0.0 0.0 0.0 0.755454690091675 0.0 5 1.828745316126059E-4 0.0 0.0 1.4593387622685952 0.0 6 1.828745316126059E-4 0.0 0.0 1.7704083405416378 0.0 7 1.828745316126059E-4 0.0 0.0 2.1052516079243193 0.0 8 1.828745316126059E-4 0.0 0.0 2.578713770269356 0.0 9 1.828745316126059E-4 0.0 0.0 2.7352543693297466 0.0 10 1.828745316126059E-4 0.0 0.0 3.3687317468358136 0.0 11 1.828745316126059E-4 0.0 0.0 4.050122251624383 0.0 12 1.828745316126059E-4 0.0 0.0 4.807771436095409 0.0 13 1.828745316126059E-4 0.0 0.0 5.0548349283040395 0.0 14 1.828745316126059E-4 0.0 0.0 5.137859965656163 0.0 15 1.828745316126059E-4 0.0 0.0 5.339570574024867 0.0 16 1.828745316126059E-4 0.0 0.0 5.710257249603619 0.0 17 1.828745316126059E-4 0.0 0.0 6.14257264233582 0.0 18 1.828745316126059E-4 0.0 0.0 6.6213381660976225 0.0 19 1.828745316126059E-4 0.0 0.0 6.956730057075141 0.0 20 1.828745316126059E-4 0.0 0.0 7.248780684060473 0.0 21 1.828745316126059E-4 0.0 0.0 7.620198857765676 0.0 22 1.828745316126059E-4 0.0 0.0 7.993080027723779 0.0 23 1.828745316126059E-4 0.0 0.0 8.347856619052234 0.0 24 1.828745316126059E-4 0.0 0.0 8.660389193578178 0.0 25 1.828745316126059E-4 0.0 0.0 8.940552976008691 0.0 26 1.828745316126059E-4 0.0 0.0 9.209744286542445 0.0 27 1.828745316126059E-4 0.0 0.0 9.459916645788491 0.0 28 1.828745316126059E-4 0.0 0.0 9.725267591158381 0.0 29 1.828745316126059E-4 0.0 0.0 10.006162871715345 0.0 30 1.828745316126059E-4 0.0 0.0 10.311929088571622 0.0 31 1.828745316126059E-4 0.0 0.0 10.620804172465313 0.0 32 3.657490632252118E-4 0.0 0.0 10.936994237623509 0.0 33 3.657490632252118E-4 0.0 0.0 11.229776362735292 0.0 34 3.657490632252118E-4 0.0 0.0 11.52786184926384 0.0 35 3.657490632252118E-4 0.0 0.0 11.843869039890421 0.0 36 3.657490632252118E-4 0.0 0.0 12.13921140844478 0.0 37 3.657490632252118E-4 0.0 0.0 12.432725031683013 0.0 38 3.657490632252118E-4 0.0 0.0 12.741600115576704 0.0 39 3.657490632252118E-4 0.0 0.0 13.043891716332341 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 40 6.8030204E-9 45.000004 1 CTATGCG 20 7.030038E-4 45.000004 1 TCGCACC 20 7.030038E-4 45.000004 41 CGATTGA 40 6.8030204E-9 45.000004 10 GTTAAGC 20 7.030038E-4 45.000004 37 TTGCGTA 20 7.030038E-4 45.000004 41 TTGCGAA 20 7.030038E-4 45.000004 1 TCCCGAT 20 7.030038E-4 45.000004 44 GTATACG 20 7.030038E-4 45.000004 1 ACGTATA 20 7.030038E-4 45.000004 40 ACCGTAC 20 7.030038E-4 45.000004 45 CATCCGT 20 7.030038E-4 45.000004 18 CGATATT 20 7.030038E-4 45.000004 10 TGCGTAA 20 7.030038E-4 45.000004 42 CGTATAC 25 3.888114E-5 45.0 17 ATTACGG 25 3.888114E-5 45.0 2 CATCGTA 25 3.888114E-5 45.0 14 CGATAAT 35 1.2103737E-7 45.0 10 CGAAAGG 75 0.0 42.0 2 TAGGGCG 210 0.0 40.714287 5 >>END_MODULE