SRR3551847_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551847_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	360653
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCG	3787	1.0500397889383977	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGC	3687	1.0223123057343206	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTC	3398	0.9421798792745382	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1406	0.38984841384932334	No Hit
GCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	1248	0.3460389903868816	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACGAAGGT	1009	0.2797703055291374	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCT	769	0.2132243458393525	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTA	767	0.21266979617527096	No Hit
GAACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT	706	0.19575603142078396	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTC	502	0.1391919656844668	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGAC	25	3.8854632E-5	45.000004	10
ATATGCA	25	3.8854632E-5	45.000004	28
CGTTCAT	25	3.8854632E-5	45.000004	26
GTACTAT	25	3.8854632E-5	45.000004	13
GACTCGA	25	3.8854632E-5	45.000004	9
AGTGTCG	25	3.8854632E-5	45.000004	1
TATCACG	20	7.026843E-4	45.0	1
AACGTCA	20	7.026843E-4	45.0	45
AGCCGTA	20	7.026843E-4	45.0	9
CGAACGA	20	7.026843E-4	45.0	34
GCGACGC	20	7.026843E-4	45.0	19
CGTATCG	20	7.026843E-4	45.0	2
GCGAACC	35	1.2088276E-7	45.0	33
GCGAACA	35	1.2088276E-7	45.0	33
CGGCACT	20	7.026843E-4	45.0	26
TAGCGAC	20	7.026843E-4	45.0	41
CCGGAAA	20	7.026843E-4	45.0	35
CACGCAT	20	7.026843E-4	45.0	20
ACCGAAC	20	7.026843E-4	45.0	40
CGCGCGA	20	7.026843E-4	45.0	40