SRR3551846_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551846_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	626623
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCG	4031	0.6432895058113092	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGC	3726	0.5946159014271739	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTC	3593	0.573391018203928	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1478	0.23586749927787523	No Hit
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	1435	0.2290053189876529	No Hit
GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG	1138	0.18160839930867523	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTACCGT	1119	0.17857627313392582	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCT	801	0.12782805610390938	No Hit
GAACTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCT	783	0.12495551551730466	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTACCGTCGTA	685	0.1093161278791235	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAT	20	7.0308277E-4	45.0	43
GGCGTAT	20	7.0308277E-4	45.0	25
GTAATCG	20	7.0308277E-4	45.0	34
TGGCACG	20	7.0308277E-4	45.0	2
ATATACG	20	7.0308277E-4	45.0	1
TCGTCGT	20	7.0308277E-4	45.0	29
GTCGTAA	20	7.0308277E-4	45.0	31
AACGAGC	40	6.8066583E-9	45.0	15
ATACGCA	20	7.0308277E-4	45.0	38
CCCGCCA	20	7.0308277E-4	45.0	40
TCGCCGT	25	3.8887687E-5	44.999996	13
TACGAAT	90	0.0	44.999996	12
CGTATGG	60	3.6379788E-12	41.249996	2
GGCCGAT	115	0.0	41.086956	8
TACGGGA	155	0.0	40.64516	4
CTAGCGG	50	1.0804797E-9	40.499996	2
CGAATAT	95	0.0	40.263153	14
CGTAAGG	90	0.0	39.999996	2
CCGATAA	80	0.0	39.375	11
ACGGGAC	160	0.0	39.375	5