SRR3551844_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551844_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	695404
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1571	0.22591184405036496	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG	1089	0.15659961691333382	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC	1029	0.14797153884648348	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	992	0.1426508907052591	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	982	0.1412128776941174	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCGC	25	3.8892103E-5	45.000004	18
TTAAGCG	30	2.164259E-6	45.000004	1
CTCGATG	30	2.164259E-6	45.000004	1
ATTATCG	25	3.8892103E-5	45.000004	17
TGCGTCG	25	3.8892103E-5	45.000004	1
TCGTTTA	35	1.2110104E-7	45.0	11
TAGAACG	20	7.0313626E-4	45.0	1
TACGGTA	20	7.0313626E-4	45.0	1
AGACGTC	20	7.0313626E-4	45.0	19
CCGTATT	20	7.0313626E-4	45.0	23
ACGGATC	20	7.0313626E-4	45.0	29
GACGCAC	20	7.0313626E-4	45.0	26
TATCGCG	20	7.0313626E-4	45.0	1
CGGAGAT	20	7.0313626E-4	45.0	29
GTACGAT	20	7.0313626E-4	45.0	10
TTCGACG	60	3.6379788E-12	41.250004	25
ATGCGCG	55	6.002665E-11	40.909092	1
TAGTACG	55	6.002665E-11	40.909092	1
GATAGCG	45	1.9264917E-8	40.0	1
TGCGTAG	45	1.9264917E-8	40.0	1