##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551844_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 695404 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.171149432560068 28.0 25.0 31.0 16.0 33.0 2 27.654784844493275 31.0 25.0 33.0 16.0 34.0 3 27.518051377328863 31.0 25.0 33.0 16.0 34.0 4 31.63330668215886 35.0 28.0 37.0 19.0 37.0 5 33.14287234470898 35.0 32.0 35.0 28.0 37.0 6 32.839158244703796 35.0 32.0 35.0 28.0 37.0 7 34.22623539697787 35.0 33.0 37.0 32.0 37.0 8 34.35055018377806 35.0 35.0 37.0 32.0 37.0 9 36.671901513364894 39.0 37.0 39.0 32.0 39.0 10 35.52033925602959 37.0 34.0 39.0 31.0 39.0 11 36.02157594721917 37.0 35.0 39.0 31.0 39.0 12 36.000550758983266 37.0 35.0 39.0 31.0 39.0 13 36.19783751603384 37.0 35.0 39.0 32.0 39.0 14 37.053888099579524 39.0 36.0 40.0 32.0 41.0 15 37.31634848232107 39.0 36.0 40.0 32.0 41.0 16 36.74520710263386 38.0 35.0 40.0 31.0 41.0 17 37.05774053643638 38.0 35.0 40.0 32.0 41.0 18 36.812539185854554 38.0 35.0 40.0 32.0 41.0 19 36.29580934248293 38.0 34.0 40.0 30.0 41.0 20 36.98709958527705 38.0 35.0 40.0 32.0 41.0 21 37.00148546744051 39.0 35.0 40.0 32.0 41.0 22 37.432383190203105 39.0 36.0 40.0 33.0 41.0 23 37.78007604212803 39.0 36.0 40.0 34.0 41.0 24 37.852087419686974 40.0 36.0 41.0 34.0 41.0 25 36.70325882508585 39.0 35.0 40.0 31.0 41.0 26 37.08813150341384 39.0 35.0 40.0 32.0 41.0 27 37.43899229800231 39.0 35.0 40.0 33.0 41.0 28 37.53081805684178 39.0 36.0 41.0 33.0 41.0 29 37.653349707508156 40.0 36.0 41.0 33.0 41.0 30 37.21719604718984 39.0 35.0 41.0 32.0 41.0 31 37.32862192337116 39.0 35.0 40.0 33.0 41.0 32 37.30822802284715 39.0 35.0 40.0 33.0 41.0 33 37.46907409218239 39.0 35.0 41.0 33.0 41.0 34 37.52447354343662 40.0 36.0 41.0 33.0 41.0 35 37.45025625391859 40.0 35.0 41.0 33.0 41.0 36 37.34113119855508 40.0 35.0 41.0 33.0 41.0 37 37.386552277525006 40.0 35.0 41.0 33.0 41.0 38 37.24010503247033 39.0 35.0 41.0 33.0 41.0 39 37.16198928967909 39.0 35.0 41.0 33.0 41.0 40 37.03101937866334 39.0 35.0 41.0 32.0 41.0 41 36.887765960506414 39.0 35.0 41.0 32.0 41.0 42 37.0058728451375 39.0 35.0 41.0 33.0 41.0 43 36.966567635503964 39.0 35.0 41.0 33.0 41.0 44 36.972926529039235 39.0 35.0 41.0 33.0 41.0 45 36.94009093994283 39.0 35.0 41.0 33.0 41.0 46 36.77182903750913 39.0 35.0 40.0 32.0 41.0 47 36.76277818361701 39.0 35.0 41.0 32.0 41.0 48 36.72477725178457 39.0 35.0 40.0 32.0 41.0 49 36.6727801393147 39.0 35.0 40.0 32.0 41.0 50 36.57112987558311 38.0 35.0 40.0 32.0 41.0 51 35.6188302051757 37.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 20.0 10 24.0 11 24.0 12 39.0 13 39.0 14 64.0 15 79.0 16 112.0 17 176.0 18 276.0 19 438.0 20 642.0 21 1087.0 22 1470.0 23 2111.0 24 2996.0 25 3990.0 26 5249.0 27 6196.0 28 7100.0 29 8746.0 30 11695.0 31 16337.0 32 24609.0 33 40652.0 34 57059.0 35 57765.0 36 85313.0 37 138095.0 38 169569.0 39 53424.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.69733852551898 20.662233751890987 24.084417115806065 12.556010606783971 2 33.820340406439996 22.88223823849158 25.472099671557828 17.82532168351059 3 35.06997371312215 21.06286417679507 25.562263087356413 18.304899022726357 4 29.80814030405347 25.681905769883407 24.581969617661102 19.92798430840202 5 26.658604207050868 29.89456488602309 23.189397817671452 20.257433089254594 6 27.211664011135973 34.04840927000707 23.049479151687365 15.690447567169588 7 81.16346756705455 6.181442729693818 7.95364996462488 4.701439738626755 8 82.38448441481498 5.576758258508723 7.46256852131998 4.576188805356311 9 76.01854461579168 7.920431864067506 9.640295425393008 6.420728094747802 10 43.143266360274026 23.77725753662619 17.52434556027863 15.555130542821152 11 33.13584621313654 24.78674267044768 23.074212975479004 19.003198140936778 12 29.928070589182692 23.072631161166747 27.715399968938918 19.283898280711647 13 25.183490460221687 25.67514710873104 29.365663700525165 19.775698730522116 14 22.190985384035756 27.80024273659628 28.474958441423976 21.533813437943987 15 21.283886776607556 25.77408240389759 32.83731471202351 20.10471610747134 16 24.347142092941656 24.092326187367345 30.31647790349207 21.244053816198928 17 23.962473612461245 24.532214367475596 27.59518208120747 23.910129938855686 18 25.56758373549764 24.264024940897666 28.880909514469288 21.287481809135407 19 25.636752161333554 25.672558685310985 27.337202547008644 21.353486606346813 20 27.228057359462987 25.20017141115093 27.168092216898376 20.403679012487704 21 25.8228310449753 26.40623292359549 26.228925919321718 21.542010112107494 22 25.150128558363193 24.86223835353262 26.65745379664195 23.33017929146223 23 23.905096893316692 26.545432583074014 27.04442309794019 22.505047425669108 24 23.932850544431723 25.204916854087696 28.975530770602415 21.886701830878167 25 22.371887420837382 26.50804424478433 28.241568929715676 22.878499404662612 26 22.340970141097838 27.296362977492223 27.769613059458965 22.59305382195098 27 23.33061069536557 27.588711022657332 27.645081132694088 21.435597149283005 28 21.305169369172454 27.602515947564292 29.02471081558346 22.067603867679793 29 22.648273521578822 26.933552294781165 28.219567330645205 22.198606852994807 30 23.578667939787522 27.753938717637517 26.027316495159646 22.640076847415315 31 25.83189052694549 26.550609429914125 24.504316915059448 23.113183128080944 32 25.779115449436585 27.63832247154172 25.25237128345537 21.330190795566317 33 24.250795221195162 28.72387849365261 24.55694819126723 22.468378093884994 34 23.820397926960442 27.156156708905904 26.02544707824516 22.997998285888492 35 24.42134356431657 26.498409557609676 26.38681974794508 22.693427130128676 36 24.899770493123423 28.945763901271775 24.80529303829141 21.34917256731339 37 24.22318537138124 29.66678362505824 26.183053304266295 19.926977699294223 38 23.60009433365353 28.926638328223593 25.090594819701927 22.382672518420947 39 23.66681813737051 28.006741404996234 27.012211606490617 21.314228851142644 40 24.66753139182403 27.15083606076468 26.911838298312922 21.269794249098368 41 21.982042093516863 27.645368735296316 26.392571799989646 23.980017371197174 42 22.836940828640618 27.266883710763818 26.3789106763838 23.51726478421177 43 23.633743838114246 26.017106602780544 26.60367211002525 23.74547744907996 44 22.515401119349328 26.735394101845834 26.667951291623286 24.081253487181552 45 22.82903175707934 27.266308505559355 26.203041685121164 23.701618052240136 46 23.538978780680008 28.160896399790623 26.295793524339807 22.00433129518956 47 23.348873460607074 26.9085308683873 27.611863032136714 22.130732638868917 48 23.61735048978723 25.62381004423328 28.23725489068225 22.521584575297236 49 22.7850285589384 25.886966425272217 28.733800783429487 22.594204232359893 50 21.873472111175662 27.07979821801428 28.3026844826892 22.74404518812086 51 21.916612501509913 27.308010882882467 26.42233866932028 24.353037946287337 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 191.0 1 735.0 2 1279.0 3 2274.0 4 3269.0 5 2406.5 6 1544.0 7 1615.5 8 1687.0 9 1641.0 10 1595.0 11 1732.5 12 1870.0 13 1741.5 14 1613.0 15 1558.5 16 1504.0 17 1461.5 18 1419.0 19 1543.0 20 1667.0 21 1779.5 22 1892.0 23 2185.5 24 2479.0 25 2934.0 26 4665.5 27 5942.0 28 7164.0 29 8386.0 30 10039.0 31 11692.0 32 12978.0 33 14264.0 34 15699.5 35 17135.0 36 18681.0 37 20227.0 38 21803.5 39 23380.0 40 26249.0 41 29118.0 42 33939.0 43 38760.0 44 41558.0 45 44356.0 46 49326.0 47 54296.0 48 55923.5 49 57551.0 50 55826.5 51 54102.0 52 51242.0 53 48382.0 54 46808.0 55 45234.0 56 42063.5 57 38893.0 58 37969.5 59 37046.0 60 34981.5 61 32917.0 62 29899.0 63 26881.0 64 24194.0 65 21507.0 66 18036.5 67 14566.0 68 11990.0 69 9414.0 70 7760.5 71 6107.0 72 5305.0 73 4503.0 74 3493.5 75 1966.0 76 1448.0 77 1104.5 78 761.0 79 578.0 80 395.0 81 249.5 82 104.0 83 101.0 84 98.0 85 65.0 86 32.0 87 25.0 88 18.0 89 12.5 90 7.0 91 3.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 695404.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.940989245343516 #Duplication Level Percentage of deduplicated Percentage of total 1 74.21811887903903 17.768551858927 2 9.893506994139626 4.737206890908553 3 3.330606066433857 2.3921401205090653 4 1.6516216345668011 1.5816582316216188 5 0.9237784032169085 1.105808440824831 6 0.6575192245781529 0.9444996410539301 7 0.49037493787061903 0.821804277962254 8 0.3481162445833101 0.6667397814158721 9 0.3190817744139351 0.6875219996666232 >10 6.556596259460118 41.8817770876945 >50 1.5292407264432883 23.349494378777326 >100 0.07661284901707993 2.9871258171509862 >500 0.003016253898310233 0.5428905838935627 >1k 0.00180975233898614 0.5327808895938688 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1571 0.22591184405036496 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG 1089 0.15659961691333382 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC 1029 0.14797153884648348 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC 992 0.1426508907052591 No Hit GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC 982 0.1412128776941174 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06643620111474768 0.0 2 0.0 0.0 0.0 0.39113953903054915 0.0 3 0.0 0.0 0.0 0.5135144462787099 0.0 4 0.0 0.0 0.0 0.749492381407067 0.0 5 0.0 0.0 0.0 1.416442815974599 0.0 6 0.0 0.0 0.0 1.7512122449683925 0.0 7 0.0 0.0 0.0 2.1295534681997803 0.0 8 0.0 0.0 0.0 2.7675998412433636 0.0 9 0.0 0.0 0.0 3.0309000235834134 0.0 10 0.0 0.0 0.0 3.745880092723079 0.0 11 0.0 0.0 0.0 4.536643447549913 0.0 12 0.0 0.0 0.0 5.268735871522166 0.0 13 0.0 0.0 0.0 5.501693979327125 0.0 14 0.0 0.0 0.0 5.591713593824597 0.0 15 0.0 0.0 0.0 5.809716366313682 0.0 16 0.0 0.0 0.0 6.217393054972361 0.0 17 0.0 0.0 0.0 6.691505944745788 0.0 18 0.0 0.0 0.0 7.2307608239239345 0.0 19 0.0 0.0 0.0 7.558627790464248 0.0 20 0.0 0.0 0.0 7.858165900685069 0.0 21 0.0 0.0 0.0 8.227016238042921 0.0 22 1.4380130111417248E-4 0.0 0.0 8.623045021311352 0.0 23 1.4380130111417248E-4 0.0 0.0 9.004837475769481 0.0 24 1.4380130111417248E-4 0.0 0.0 9.323069755135144 0.0 25 1.4380130111417248E-4 0.0 0.0 9.610528556062375 0.0 26 1.4380130111417248E-4 0.0 0.0 9.880299796952563 0.0 27 1.4380130111417248E-4 0.0 0.0 10.161143738028542 0.0 28 1.4380130111417248E-4 0.0 0.0 10.431346382822072 0.0 29 1.4380130111417248E-4 0.0 0.0 10.701692828916716 0.0 30 1.4380130111417248E-4 0.0 0.0 11.011440831516644 0.0 31 1.4380130111417248E-4 0.0 0.0 11.342759029283696 0.0 32 1.4380130111417248E-4 0.0 0.0 11.655383057905908 0.0 33 1.4380130111417248E-4 0.0 0.0 11.942410454929796 0.0 34 1.4380130111417248E-4 0.0 0.0 12.24928243150744 0.0 35 1.4380130111417248E-4 0.0 0.0 12.572403955110985 0.0 36 1.4380130111417248E-4 0.0 0.0 12.8992643125435 0.0 37 1.4380130111417248E-4 0.0 0.0 13.216921386704707 0.0 38 1.4380130111417248E-4 0.0 0.0 13.52062973465784 0.0 39 1.4380130111417248E-4 0.0 0.0 13.821605857889802 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATCGC 25 3.8892103E-5 45.000004 18 TTAAGCG 30 2.164259E-6 45.000004 1 CTCGATG 30 2.164259E-6 45.000004 1 ATTATCG 25 3.8892103E-5 45.000004 17 TGCGTCG 25 3.8892103E-5 45.000004 1 TCGTTTA 35 1.2110104E-7 45.0 11 TAGAACG 20 7.0313626E-4 45.0 1 TACGGTA 20 7.0313626E-4 45.0 1 AGACGTC 20 7.0313626E-4 45.0 19 CCGTATT 20 7.0313626E-4 45.0 23 ACGGATC 20 7.0313626E-4 45.0 29 GACGCAC 20 7.0313626E-4 45.0 26 TATCGCG 20 7.0313626E-4 45.0 1 CGGAGAT 20 7.0313626E-4 45.0 29 GTACGAT 20 7.0313626E-4 45.0 10 TTCGACG 60 3.6379788E-12 41.250004 25 ATGCGCG 55 6.002665E-11 40.909092 1 TAGTACG 55 6.002665E-11 40.909092 1 GATAGCG 45 1.9264917E-8 40.0 1 TGCGTAG 45 1.9264917E-8 40.0 1 >>END_MODULE