SRR3551841_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551841_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	314248
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGC	4076	1.2970647386777323	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCG	3483	1.1083602759603879	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTC	3436	1.0934039357450167	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGC	1236	0.3933199256638069	RNA PCR Primer, Index 23 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1148	0.36531656526055856	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAGGATAT	1096	0.3487691250222754	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCT	731	0.23261882334971104	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTT	723	0.2300730633130521	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGGATATCGTA	678	0.21575316310684556	No Hit
GAACTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCT	649	0.20652478297395688	RNA PCR Primer, Index 23 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTC	526	0.1673837224103256	No Hit
CCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGC	344	0.10946768157633462	RNA PCR Primer, Index 1 (95% over 22bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	320	0.10183040146635779	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	30	2.16045E-6	45.000004	1
CGAACAC	30	2.16045E-6	45.000004	34
CGCGGGC	75	0.0	45.000004	4
GAGACCG	30	2.16045E-6	45.000004	10
ACGGATG	30	2.16045E-6	45.000004	37
AGACTCG	20	7.025454E-4	45.0	15
ACACGAC	25	3.884315E-5	45.0	26
GATCGGC	20	7.025454E-4	45.0	16
CGCGGAT	20	7.025454E-4	45.0	37
CCCTATT	35	1.2081546E-7	45.0	17
TAGCGCG	20	7.025454E-4	45.0	1
CGACCTT	20	7.025454E-4	45.0	37
TTCGTCG	20	7.025454E-4	45.0	1
CCGTCCA	20	7.025454E-4	45.0	17
TCGGCAT	20	7.025454E-4	45.0	18
CTGCCGT	20	7.025454E-4	45.0	14
AATCTTA	20	7.025454E-4	45.0	39
AGACACG	25	3.884315E-5	45.0	24
GGACGCA	35	1.2081546E-7	45.0	8
GCGATAT	20	7.025454E-4	45.0	9