SRR3551838_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551838_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	591286
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCG	4801	0.8119590181401216	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGC	4742	0.8019807673443985	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTC	4453	0.753104250734839	RNA PCR Primer, Index 17 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGAGATGT	1709	0.2890310272862879	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1507	0.25486820252804904	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGC	1402	0.23711029856955854	RNA PCR Primer, Index 47 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1143	0.19330746880528205	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCT	958	0.16201973325937025	TruSeq Adapter, Index 9 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGAGATGTCGTA	954	0.1613432416799992	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCT	878	0.14848990167194892	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTC	683	0.11551093717760948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTT	20	7.0305035E-4	45.000004	20
GTATTCG	25	3.8884988E-5	45.000004	26
TTTACGG	50	2.1827873E-11	45.000004	2
CGCATCG	30	2.163706E-6	45.000004	21
TTGTCGT	20	7.0305035E-4	45.000004	42
TAACGCG	30	2.163706E-6	45.000004	1
TATGCGA	25	3.8884988E-5	45.000004	20
TAGGCCG	40	6.8048394E-9	45.000004	1
AATAGCG	25	3.8884988E-5	45.000004	1
CGCGTAA	20	7.0305035E-4	45.000004	31
TACGGCT	520	0.0	42.403843	7
GTCGAAT	75	0.0	42.0	43
ACCCGTG	65	0.0	41.53846	39
CGTATGG	60	3.6379788E-12	41.250004	2
GCTACGA	170	0.0	41.02941	10
GCGTTAG	55	6.002665E-11	40.909092	1
ACGTGCG	55	6.002665E-11	40.909092	1
GTCGTTT	55	6.002665E-11	40.909092	9
ACGGCTG	550	0.0	40.090908	8
CGAATAT	175	0.0	39.857143	14