SRR3551837_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551837_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	274309
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCG	2106	0.7677473214513559	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTC	1978	0.7210846162539326	TruSeq Adapter, Index 23 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGC	1753	0.6390603297740869	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1221	0.4451184612972961	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC	993	0.3620005176643858	TruSeq Adapter, Index 23 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC	684	0.249353830898731	TruSeq Adapter, Index 23 (95% over 24bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTCTTGT	485	0.1768079064121119	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCT	472	0.17206872541549859	No Hit
CTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGCT	434	0.15821573481001353	TruSeq Adapter, Index 20 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCT	388	0.14144632512968952	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTC	332	0.12103139160581679	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTA	331	0.12066683922146192	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	304	0.11082392484388044	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCC	303	0.11045937245952556	No Hit
TCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC	293	0.10681384861597687	TruSeq Adapter, Index 23 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGACTTA	25	3.8830152E-5	45.000004	14
CGTATTC	20	7.023885E-4	45.000004	45
CATATGA	20	7.023885E-4	45.000004	10
ATAGGTC	20	7.023885E-4	45.000004	29
ACTTGCG	20	7.023885E-4	45.000004	1
CGGCCCA	20	7.023885E-4	45.000004	21
TTTCGCT	20	7.023885E-4	45.000004	14
ACTCTAT	20	7.023885E-4	45.000004	9
TCTTACC	20	7.023885E-4	45.000004	43
AAGACGT	20	7.023885E-4	45.000004	34
TACGGGC	20	7.023885E-4	45.000004	4
CCTCGTG	20	7.023885E-4	45.000004	32
TCGATAG	25	3.8830152E-5	45.000004	1
CGTTATC	20	7.023885E-4	45.000004	39
CATTAGC	20	7.023885E-4	45.000004	36
ATCCGCG	20	7.023885E-4	45.000004	14
CCCAATT	20	7.023885E-4	45.000004	35
GCCGACA	20	7.023885E-4	45.000004	36
TGCGACG	20	7.023885E-4	45.000004	1
GCCTCGT	20	7.023885E-4	45.000004	31