SRR3551835_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551835_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430963
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1335	0.30977137248441283	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCG	1135	0.2633636762320663	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGC	1048	0.24317632836229558	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTC	987	0.22902198100532992	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	730	0.1693880913210647	TruSeq Adapter, Index 16 (95% over 21bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	497	0.11532312518708103	No Hit
CCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	473	0.10975420163679944	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAC	20	7.0283737E-4	45.0	9
TCGTTAT	20	7.0283737E-4	45.0	19
CTCGTTA	20	7.0283737E-4	45.0	18
ATTAGCG	45	3.8380676E-10	45.0	1
TTGTCGA	20	7.0283737E-4	45.0	33
ATAGCCG	25	3.8867332E-5	45.0	1
CGTTATC	20	7.0283737E-4	45.0	20
AACGGGT	25	3.8867332E-5	45.0	4
TAACCCG	20	7.0283737E-4	45.0	17
TTAAGCG	20	7.0283737E-4	45.0	1
TCTCGTT	20	7.0283737E-4	45.0	17
TCGTCGG	20	7.0283737E-4	45.0	2
GTCCGTC	20	7.0283737E-4	45.0	6
GCGTGAT	20	7.0283737E-4	45.0	43
TAGGACG	20	7.0283737E-4	45.0	1
GACGACT	20	7.0283737E-4	45.0	10
ATCATGC	20	7.0283737E-4	45.0	31
CGATACG	25	3.8867332E-5	45.0	10
TGCACCG	25	3.8867332E-5	45.0	1
GTCGGTT	20	7.0283737E-4	45.0	28