##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551835_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 430963 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.268440678202072 28.0 25.0 31.0 16.0 33.0 2 27.72185547251156 31.0 25.0 33.0 16.0 34.0 3 27.49027874782754 31.0 25.0 33.0 16.0 34.0 4 31.712035603984564 35.0 28.0 37.0 19.0 37.0 5 33.20990665091899 35.0 32.0 35.0 28.0 37.0 6 32.839306390571814 35.0 32.0 35.0 28.0 37.0 7 34.15437288119862 35.0 33.0 37.0 31.0 37.0 8 34.2412457681982 35.0 35.0 37.0 31.0 37.0 9 36.59112035139908 39.0 37.0 39.0 32.0 39.0 10 35.557959732041965 37.0 34.0 39.0 31.0 39.0 11 36.00385879994338 37.0 35.0 39.0 31.0 39.0 12 35.93356274204514 37.0 35.0 39.0 31.0 39.0 13 36.02951065404687 37.0 35.0 39.0 32.0 39.0 14 36.84166390154143 39.0 36.0 40.0 31.0 41.0 15 37.1588929908136 39.0 36.0 40.0 32.0 41.0 16 36.72819244343482 38.0 35.0 40.0 32.0 41.0 17 36.990268306095885 38.0 35.0 40.0 32.0 41.0 18 36.683576084257815 38.0 35.0 40.0 32.0 41.0 19 36.23446560377573 38.0 34.0 40.0 30.0 41.0 20 36.85435640646645 38.0 35.0 40.0 32.0 41.0 21 36.84856936674378 38.0 35.0 40.0 32.0 41.0 22 37.288458637980526 39.0 35.0 40.0 33.0 41.0 23 37.65872476291468 39.0 35.0 40.0 33.0 41.0 24 37.74464165137147 39.0 35.0 41.0 34.0 41.0 25 36.67202288827579 38.0 35.0 40.0 31.0 41.0 26 36.97930448785627 39.0 35.0 40.0 32.0 41.0 27 37.306172455640045 39.0 35.0 40.0 33.0 41.0 28 37.356230117202635 39.0 35.0 40.0 33.0 41.0 29 37.46281235280059 39.0 35.0 41.0 33.0 41.0 30 37.044117476442295 39.0 35.0 40.0 32.0 41.0 31 37.17491292755991 39.0 35.0 40.0 33.0 41.0 32 37.168295190074325 39.0 35.0 40.0 33.0 41.0 33 37.3113329914633 39.0 35.0 41.0 33.0 41.0 34 37.337479087531875 40.0 35.0 41.0 33.0 41.0 35 37.278750147924534 40.0 35.0 41.0 33.0 41.0 36 37.168190772757754 40.0 35.0 41.0 33.0 41.0 37 37.23010328032801 40.0 35.0 41.0 33.0 41.0 38 37.08146407000137 39.0 35.0 41.0 33.0 41.0 39 37.02218519919344 39.0 35.0 41.0 33.0 41.0 40 36.8570874993909 39.0 35.0 41.0 32.0 41.0 41 36.73155236064349 39.0 35.0 40.0 32.0 41.0 42 36.83333604044895 39.0 35.0 41.0 32.0 41.0 43 36.80689061473955 39.0 35.0 41.0 32.0 41.0 44 36.79421435250822 39.0 35.0 41.0 32.0 41.0 45 36.79349503321631 39.0 35.0 41.0 33.0 41.0 46 36.626547986718116 39.0 35.0 40.0 32.0 41.0 47 36.6115931066008 39.0 35.0 40.0 32.0 41.0 48 36.58238178219476 39.0 35.0 40.0 32.0 41.0 49 36.53147718017556 38.0 35.0 40.0 32.0 41.0 50 36.42821077447484 38.0 35.0 40.0 32.0 41.0 51 35.42018688379281 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 14.0 10 17.0 11 20.0 12 19.0 13 28.0 14 41.0 15 49.0 16 64.0 17 113.0 18 169.0 19 311.0 20 474.0 21 769.0 22 1013.0 23 1391.0 24 2012.0 25 2730.0 26 3515.0 27 4090.0 28 4697.0 29 5622.0 30 7469.0 31 10480.0 32 15959.0 33 27407.0 34 38109.0 35 35607.0 36 51185.0 37 82761.0 38 102652.0 39 32171.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.23518028229802 19.608179820541437 24.911419309778335 13.245220587382212 2 33.38128795279409 23.176931662346885 25.268294493958877 18.173485890900146 3 34.20572067671703 21.874267628543517 26.04283894441054 17.877172750328914 4 30.291927613275387 25.329320614530715 24.369145379069664 20.009606393124237 5 26.60251576121384 29.34683487909635 24.36752110970083 19.68312824998898 6 27.39655144409149 34.377197114369444 23.24468689887531 14.981564542663756 7 79.4098333267589 6.61773748558461 9.341173140153563 4.631256047502918 8 80.36815225436986 6.363887387084274 8.469172527571972 4.798787830973889 9 73.79194965693111 8.821406942127282 10.272575603938156 7.114067797003456 10 43.712569292491466 24.40603949759028 17.352301705714876 14.529089504203377 11 34.87422354123208 25.377816657114415 22.214204003591956 17.533755798061552 12 33.09704081324847 22.55089183990273 25.847694581669423 18.504372765179376 13 26.671431190148574 25.6404842179027 27.203727466162984 20.484357125785742 14 20.962820474147435 29.11479639783462 27.175882848411582 22.74650027960637 15 20.554200708645524 25.91544981819785 33.38360833760671 20.14674113554992 16 23.58647958177384 24.387940496051865 32.258453741968566 19.767126180205725 17 23.565596118460284 24.25475040780763 28.355334448664966 23.824319025067116 18 23.199903471991796 26.359803509814068 28.391300413260534 22.048992604933602 19 26.68024865243652 26.69741950004989 25.445107816680316 21.177224030833273 20 28.635172857066614 26.29483273506078 26.786754315335653 18.283240092536946 21 26.87956970784035 27.192821657543686 25.501725206108183 20.425883428507785 22 24.775444759758958 25.544652325141605 26.889547362534604 22.790355552564836 23 24.48493258121927 27.05383060726791 26.924353134723862 21.53688367678896 24 24.39536572745224 25.721233609381777 27.748089743203014 22.135310919962965 25 23.641936778795394 26.307826890011437 27.263361355847255 22.78687497534591 26 22.299826203177535 29.596972361896494 26.674911767367497 21.428289667558467 27 23.581606773667346 29.51599093193615 26.57327891257486 20.32912338182164 28 21.39510816473804 29.173734172075093 28.465088650301766 20.966069012885097 29 23.984889654100236 27.81839740302532 27.386805827878497 20.80990711499595 30 24.156598130233917 26.39066462782188 27.21068862060084 22.242048621343365 31 24.572411088654942 27.8724623691593 24.007165348301363 23.547961193884394 32 26.861006629339414 28.578787506120012 24.287467833665534 20.27273803087504 33 26.117555335376817 27.86410898383388 24.61116151502565 21.40717416576365 34 23.490879727494008 27.858540060283598 25.992486593976743 22.65809361824565 35 23.91991887934695 26.892795901272265 25.967194399519215 23.220090819861568 36 23.124955042544258 30.466652589665472 25.024422050152793 21.383970317637477 37 24.777533106090313 28.93334230548794 25.561127057311182 20.72799753111056 38 23.62360573877572 27.812828479475037 25.834236349756246 22.729329431993 39 24.573803319542513 26.20201734255609 26.836178511844405 22.388000826056995 40 23.189925817297542 26.12033979715196 29.198330251088837 21.491404134461657 41 20.574388056515293 27.647617080816683 28.155781354779876 23.622213507888148 42 22.33300770599796 27.578237574919424 26.755893197327847 23.33286152175477 43 24.46219281005562 26.69602726916232 26.25422600083998 22.58755391994208 44 22.623055807575128 27.26684193306618 26.709021424112976 23.401080835245715 45 23.033531880927132 26.855205667307867 25.680162798198452 24.431099653566548 46 21.926476286827405 29.272814603573856 26.25074542362105 22.549963685977684 47 22.429767752684103 26.786290238373134 28.10078823472085 22.683153774221918 48 23.056735729053308 24.70745748474927 28.652343704679982 23.58346308151744 49 21.891438476156885 26.564229411805655 28.24140355436546 23.302928557672004 50 20.987416553161175 26.500186790977416 28.040226191111532 24.472170464749873 51 21.308557811227413 26.41758109164824 26.375350088058603 25.898511009065743 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 160.0 1 594.5 2 1029.0 3 1900.0 4 2771.0 5 1990.0 6 1209.0 7 1276.0 8 1343.0 9 1316.5 10 1290.0 11 1288.0 12 1286.0 13 1199.0 14 1112.0 15 1099.0 16 1086.0 17 1097.5 18 1109.0 19 1044.0 20 979.0 21 1359.0 22 1739.0 23 1740.5 24 1742.0 25 2307.5 26 3096.5 27 3320.0 28 4077.0 29 4834.0 30 5838.5 31 6843.0 32 8048.0 33 9253.0 34 9888.0 35 10523.0 36 11108.0 37 11693.0 38 13058.0 39 14423.0 40 15735.5 41 17048.0 42 19691.0 43 22334.0 44 25958.0 45 29582.0 46 32447.0 47 35312.0 48 34119.0 49 32926.0 50 32322.5 51 31719.0 52 30470.5 53 29222.0 54 27645.5 55 26069.0 56 24631.0 57 23193.0 58 23234.0 59 23275.0 60 24137.0 61 24999.0 62 22364.0 63 19729.0 64 16497.5 65 13266.0 66 10665.5 67 8065.0 68 6722.0 69 5379.0 70 4178.5 71 2978.0 72 2636.5 73 2295.0 74 1692.0 75 961.5 76 834.0 77 707.5 78 581.0 79 448.0 80 315.0 81 204.5 82 94.0 83 54.5 84 15.0 85 17.5 86 20.0 87 13.0 88 6.0 89 3.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 430963.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.687691942075396 #Duplication Level Percentage of deduplicated Percentage of total 1 72.26239813014293 17.117294259024305 2 10.660215331437785 5.050317936145747 3 3.5035056995964644 2.489698911880392 4 1.714459893969289 1.6244639126155103 5 0.989041017404187 1.1714049469173604 6 0.6903260189058728 0.9811338045264979 7 0.46954127923725647 0.7785644423662094 8 0.38961933619482914 0.7383346248367215 9 0.35565252027850464 0.7582128604901945 >10 7.7284491440449745 48.01257514036909 >50 1.1698570252913243 17.139775601628752 >100 0.06193948383267473 2.899383258838508 >500 0.0019980478655701526 0.40632068686138734 >1k 0.0029970717983552287 0.8325196134993366 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1335 0.30977137248441283 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCG 1135 0.2633636762320663 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGC 1048 0.24317632836229558 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTC 987 0.22902198100532992 No Hit GCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC 730 0.1693880913210647 TruSeq Adapter, Index 16 (95% over 21bp) AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 497 0.11532312518708103 No Hit CCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC 473 0.10975420163679944 TruSeq Adapter, Index 16 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09467170035478684 0.0 2 0.0 0.0 0.0 0.4803196562117862 0.0 3 0.0 0.0 0.0 0.6167582831936849 0.0 4 0.0 0.0 0.0 0.8945083452639786 0.0 5 0.0 0.0 0.0 1.6943449901731704 0.0 6 0.0 0.0 0.0 2.0254639029336623 0.0 7 0.0 0.0 0.0 2.420393398041131 0.0 8 0.0 0.0 0.0 2.985871176875973 0.0 9 0.0 0.0 0.0 3.189600963423774 0.0 10 0.0 0.0 0.0 3.9516153358873036 0.0 11 0.0 0.0 0.0 4.741010249139717 0.0 12 0.0 0.0 0.0 5.584934205488638 0.0 13 0.0 0.0 0.0 5.8524745743834155 0.0 14 0.0 0.0 0.0 5.955963737026148 0.0 15 0.0 0.0 0.0 6.188698333731666 0.0 16 0.0 0.0 0.0 6.593837522014651 0.0 17 0.0 0.0 0.0 7.046080521993767 0.0 18 0.0 0.0 0.0 7.564222450651216 0.0 19 0.0 0.0 0.0 7.90763940291858 0.0 20 0.0 0.0 0.0 8.2343495845351 0.0 21 0.0 0.0 0.0 8.61094803962289 0.0 22 0.0 0.0 0.0 9.00448530384279 0.0 23 0.0 0.0 0.0 9.396398298693855 0.0 24 0.0 0.0 0.0 9.712434710172335 0.0 25 2.3203848126173245E-4 0.0 0.0 10.007355619855996 0.0 26 2.3203848126173245E-4 0.0 0.0 10.284873643445028 0.0 27 2.3203848126173245E-4 0.0 0.0 10.534779087763916 0.0 28 2.3203848126173245E-4 0.0 0.0 10.809744688059068 0.0 29 2.3203848126173245E-4 0.0 0.0 11.070787979478517 0.0 30 2.3203848126173245E-4 0.0 0.0 11.371973928156246 0.0 31 2.3203848126173245E-4 0.0 0.0 11.698916148254026 0.0 32 2.3203848126173245E-4 0.0 0.0 12.019129252395217 0.0 33 2.3203848126173245E-4 0.0 0.0 12.293862814209108 0.0 34 2.3203848126173245E-4 0.0 0.0 12.594816724405575 0.0 35 2.3203848126173245E-4 0.0 0.0 12.913405559177933 0.0 36 2.3203848126173245E-4 0.0 0.0 13.249397280044922 0.0 37 2.3203848126173245E-4 0.0 0.0 13.588637539649575 0.0 38 2.3203848126173245E-4 0.0 0.0 13.910010836197076 0.0 39 2.3203848126173245E-4 0.0 0.0 14.233936556038453 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATAAC 20 7.0283737E-4 45.0 9 TCGTTAT 20 7.0283737E-4 45.0 19 CTCGTTA 20 7.0283737E-4 45.0 18 ATTAGCG 45 3.8380676E-10 45.0 1 TTGTCGA 20 7.0283737E-4 45.0 33 ATAGCCG 25 3.8867332E-5 45.0 1 CGTTATC 20 7.0283737E-4 45.0 20 AACGGGT 25 3.8867332E-5 45.0 4 TAACCCG 20 7.0283737E-4 45.0 17 TTAAGCG 20 7.0283737E-4 45.0 1 TCTCGTT 20 7.0283737E-4 45.0 17 TCGTCGG 20 7.0283737E-4 45.0 2 GTCCGTC 20 7.0283737E-4 45.0 6 GCGTGAT 20 7.0283737E-4 45.0 43 TAGGACG 20 7.0283737E-4 45.0 1 GACGACT 20 7.0283737E-4 45.0 10 ATCATGC 20 7.0283737E-4 45.0 31 CGATACG 25 3.8867332E-5 45.0 10 TGCACCG 25 3.8867332E-5 45.0 1 GTCGGTT 20 7.0283737E-4 45.0 28 >>END_MODULE