SRR3551830_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551830_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	756000
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG	5487	0.7257936507936508	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	5412	0.7158730158730159	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC	4788	0.6333333333333333	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2448	0.3238095238095238	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	1768	0.23386243386243388	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTCAAAGT	1593	0.21071428571428574	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT	1361	0.18002645502645503	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT	1060	0.1402116402116402	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTA	1006	0.13306878306878306	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTC	867	0.11468253968253968	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	817	0.10806878306878306	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTTAG	20	7.031752E-4	45.000004	1
TGCGAAC	20	7.031752E-4	45.000004	41
TCGAAAG	20	7.031752E-4	45.000004	1
CGAATAT	70	0.0	45.0	14
GCGATAT	35	1.2111923E-7	45.0	9
GCTACGA	70	0.0	45.0	10
TATAGCG	30	2.164512E-6	44.999996	1
TACGGCT	585	0.0	41.923077	7
TGTAGCG	50	1.0804797E-9	40.5	1
CGTATGG	45	1.9268555E-8	40.0	2
AGACCGG	45	1.9268555E-8	40.0	2
TCGTAAG	45	1.9268555E-8	40.0	1
CGTTAGG	85	0.0	39.705883	2
CGTTTTT	1805	0.0	39.63989	1
ACGGCTG	625	0.0	39.24	8
CTATCGG	35	6.245453E-6	38.571426	2
CTAGGCG	35	6.245453E-6	38.571426	1
TAGTACG	35	6.245453E-6	38.571426	1
GGGCGAT	935	0.0	38.502674	7
ATAGCGG	100	0.0	38.25	2