SRR3551824_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551824_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	340458
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	4478	1.3152870544971773	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	4363	1.281509026076638	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC	3767	1.1064507222623643	No Hit
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	2099	0.6165224491714103	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1509	0.4432264772747299	No Hit
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	1053	0.3092892515376346	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCCTGTT	1038	0.30488342174365124	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT	968	0.284322882705062	No Hit
GAACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT	841	0.2470201904493359	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTA	691	0.20296189250950192	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTC	658	0.19326906696273843	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	635	0.18651346127863055	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	458	0.13452466970962645	No Hit
TAACGAGGGATTGCTTTTAAAACTATCTTTCTTTGAGCTTCTTTATGTTGC	349	0.10250897320668041	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.026284E-4	45.000004	1
TTCTATC	20	7.026284E-4	45.000004	22
CGGAAAT	20	7.026284E-4	45.000004	39
CTCACAT	20	7.026284E-4	45.000004	7
AGATCGA	20	7.026284E-4	45.000004	13
CCCTCGC	20	7.026284E-4	45.000004	15
CCGATCG	45	3.8380676E-10	45.000004	40
TAGCGTA	20	7.026284E-4	45.000004	12
TAAACGG	20	7.026284E-4	45.000004	2
TATGAAC	20	7.026284E-4	45.000004	19
TATCTCC	20	7.026284E-4	45.000004	13
CAGATCG	20	7.026284E-4	45.000004	14
AACGAGG	80	0.0	45.000004	2
CTACCGG	40	6.7902874E-9	45.000004	2
GCTAGCG	40	6.7902874E-9	45.000004	1
CGTAAGT	20	7.026284E-4	45.000004	40
ATGCGGA	20	7.026284E-4	45.000004	45
CGTCGGA	20	7.026284E-4	45.000004	31
TGCTACG	20	7.026284E-4	45.000004	1
TCCCCCG	20	7.026284E-4	45.000004	14