##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551824_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 340458 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.469511657825635 28.0 25.0 31.0 16.0 33.0 2 27.59985372645084 31.0 25.0 33.0 16.0 34.0 3 27.410273807635598 30.0 25.0 33.0 16.0 34.0 4 31.655872383671408 35.0 28.0 37.0 19.0 37.0 5 33.207156242473374 35.0 32.0 35.0 28.0 37.0 6 32.9917493494058 35.0 32.0 35.0 28.0 37.0 7 33.939173113864264 35.0 33.0 37.0 31.0 37.0 8 33.81886165107003 35.0 35.0 37.0 29.0 37.0 9 36.01962944034213 39.0 35.0 39.0 30.0 39.0 10 35.346527324956384 37.0 34.0 39.0 31.0 39.0 11 35.93486714954561 37.0 35.0 39.0 31.0 39.0 12 35.865921787709496 37.0 35.0 39.0 31.0 39.0 13 35.93671466083922 37.0 35.0 39.0 31.0 39.0 14 36.78986835380576 38.0 36.0 40.0 31.0 41.0 15 37.04518031592737 39.0 36.0 40.0 32.0 41.0 16 36.543946683585055 38.0 34.0 40.0 32.0 41.0 17 36.7754877253582 38.0 35.0 40.0 32.0 41.0 18 36.601848098737584 38.0 35.0 40.0 31.0 41.0 19 36.153710589852494 38.0 34.0 40.0 30.0 41.0 20 36.61135294221314 38.0 35.0 40.0 31.0 41.0 21 36.747960100805386 38.0 35.0 40.0 32.0 41.0 22 37.14873787662502 39.0 35.0 40.0 32.0 41.0 23 37.48766955101657 39.0 35.0 40.0 33.0 41.0 24 37.52091006820225 39.0 35.0 41.0 33.0 41.0 25 36.56705966668429 38.0 35.0 40.0 31.0 41.0 26 36.83908734704428 39.0 35.0 40.0 32.0 41.0 27 37.140205252924005 39.0 35.0 40.0 33.0 41.0 28 37.2004535067468 39.0 35.0 40.0 32.0 41.0 29 37.31108389287372 39.0 35.0 41.0 33.0 41.0 30 36.93234114046373 39.0 35.0 40.0 32.0 41.0 31 37.093353658894785 39.0 35.0 40.0 32.0 41.0 32 36.987925089144625 39.0 35.0 40.0 32.0 41.0 33 37.0562125137315 39.0 35.0 41.0 32.0 41.0 34 37.05382455398316 39.0 35.0 41.0 32.0 41.0 35 37.02110098749332 40.0 35.0 41.0 32.0 41.0 36 36.864506047735695 39.0 35.0 41.0 32.0 41.0 37 36.95565972895335 39.0 35.0 41.0 32.0 41.0 38 36.83291037367311 39.0 35.0 41.0 32.0 41.0 39 36.75649859894612 39.0 35.0 41.0 32.0 41.0 40 36.649613168144086 39.0 35.0 40.0 31.0 41.0 41 36.44198109605296 39.0 35.0 40.0 31.0 41.0 42 36.62158327899476 39.0 35.0 40.0 31.0 41.0 43 36.585094196640995 39.0 35.0 40.0 31.0 41.0 44 36.67939070311169 39.0 35.0 40.0 32.0 41.0 45 36.69803911201969 39.0 35.0 40.0 32.0 41.0 46 36.54076861169366 39.0 35.0 40.0 32.0 41.0 47 36.47618795857345 39.0 35.0 40.0 31.0 41.0 48 36.52692549448096 39.0 35.0 40.0 32.0 41.0 49 36.53337562929936 39.0 35.0 40.0 32.0 41.0 50 36.38454963607846 39.0 35.0 40.0 31.0 41.0 51 35.51562894688919 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 4.0 9 16.0 10 19.0 11 19.0 12 10.0 13 16.0 14 24.0 15 27.0 16 51.0 17 87.0 18 114.0 19 266.0 20 470.0 21 763.0 22 1107.0 23 1519.0 24 2047.0 25 2642.0 26 3109.0 27 3385.0 28 3899.0 29 4585.0 30 6188.0 31 8708.0 32 12969.0 33 21439.0 34 29314.0 35 29398.0 36 41948.0 37 65935.0 38 78064.0 39 22314.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.14939875109411 18.406088269331313 20.667160119603594 18.777352859970982 2 28.664916083628523 27.93619183570367 24.07668493617421 19.322207144493593 3 30.556779397164995 26.172391308178984 25.916853180127948 17.353976114528077 4 28.310099924219728 23.547985360896202 29.28848786047031 18.85342685441376 5 28.357976607981012 27.030940674033214 24.630350880284794 19.98073183770098 6 25.066821751875413 34.98875044792603 24.419752216132387 15.52467558406617 7 71.41497629663571 6.948287307098086 15.625715947341522 6.0110204489246835 8 70.86718479225044 10.439466835850531 11.545330114140363 7.148018257758666 9 65.0570701819314 8.629551956482151 13.430437821992728 12.882940039593723 10 41.97669022316997 22.83923420803741 20.139929154256915 15.044146414535714 11 33.20850148917047 23.173489828407615 24.48437105311081 19.133637629311103 12 29.996651569356576 20.726198238842972 27.961745648508774 21.315404543291685 13 24.501700650300478 24.85152353594276 31.96811354117101 18.678662272585754 14 19.36332822257077 30.10855964612375 27.40514248453554 23.12296964676994 15 17.843023221660236 24.597160295836783 37.554999441928224 20.004817040574753 16 19.210299067726417 24.177725299449566 32.40311580283031 24.208859829993713 17 19.498146614266666 25.84430384952035 29.457378002573005 25.20017153363998 18 20.53968477756434 25.376111003413047 31.231165077630724 22.85303914139189 19 23.21813557031998 26.45642046889778 26.87967385110645 23.44577010967579 20 25.929189503551097 26.02259309518355 29.98284663600209 18.065370765263264 21 24.076391214187947 28.81324568669263 26.61855500531637 20.491808093803055 22 21.526590651416623 25.196059425832264 27.355503468856657 25.92184645389446 23 22.342550329262348 27.611629040880224 28.38411786475865 21.661702765098777 24 23.620534691503796 24.19006162287272 29.466483384147235 22.722920301476247 25 20.296189250950192 29.318447503069393 26.95310434767284 23.432258898307573 26 19.836808064430855 28.790041649777653 29.043817445911095 22.329332839880397 27 22.38249651939446 27.793149228392345 27.407785982411927 22.416568269801267 28 19.63267128397629 27.37665145186778 30.503321995664663 22.487355268491267 29 20.63573186707318 25.436911454570023 29.35898113717404 24.56837554118276 30 19.752803576358904 29.0335371763918 29.310223287453958 21.903435959795335 31 25.39432176656151 26.233485481322216 24.33809750395056 24.034095248165706 32 25.556162580993835 27.757021424081678 24.203572834240937 22.48324316068355 33 22.834240934270895 25.325590821775375 25.86222089068255 25.97794735327118 34 21.75305030282737 26.0707635009311 28.422008000986903 23.754178195254628 35 22.963772330214006 24.229126647046037 28.19026135382338 24.616839668916576 36 23.5838194432206 27.171046061481885 27.75907747798554 21.486057017311975 37 21.467846254163508 26.352149163773504 30.680730075369063 21.499274506693926 38 22.029736413889527 26.220561713926532 25.8669204424628 25.882781429721142 39 22.111978570043885 24.946102015520268 29.95758654518325 22.984332869252594 40 23.25661315052077 23.251032432781724 29.51670984379865 23.97564457289886 41 20.020384305846832 24.791604250744584 30.08094977941479 25.107061663993797 42 22.731144517091685 23.53564903747305 29.645947517755495 24.087258927679773 43 23.174664716352677 23.637276844720933 28.436106656327652 24.751951782598734 44 21.71927227440683 24.572193927004214 28.249299473062756 25.459234325526204 45 21.507792444295625 24.401247730997653 26.53690029313454 27.55405953157218 46 23.548572804868737 27.10936444436612 26.427048270271225 22.915014480493923 47 19.631790118017495 24.469097509824998 32.674808640125946 23.224303732031558 48 21.50603011237803 23.36235306557637 29.852140352113913 25.279476469931677 49 20.77583725452185 22.090536865046495 32.91536694687744 24.218258933554214 50 20.938559234912972 23.28627907113359 30.70452155625657 25.070640137696863 51 19.622391014456998 23.439308225977946 27.512644731508733 29.425656028056324 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 119.0 1 311.5 2 504.0 3 1606.0 4 2708.0 5 1857.5 6 1007.0 7 1015.5 8 1024.0 9 964.5 10 905.0 11 918.0 12 931.0 13 925.5 14 920.0 15 851.5 16 783.0 17 809.0 18 835.0 19 842.0 20 849.0 21 952.0 22 1055.0 23 1214.5 24 1374.0 25 1529.0 26 2255.0 27 2826.0 28 3067.5 29 3309.0 30 4037.0 31 4765.0 32 5526.0 33 6287.0 34 6815.0 35 7343.0 36 8383.0 37 9423.0 38 10214.5 39 11006.0 40 12595.0 41 14184.0 42 16610.5 43 19037.0 44 20922.5 45 22808.0 46 33264.5 47 43721.0 48 38337.0 49 32953.0 50 31852.5 51 30752.0 52 27237.5 53 23723.0 54 21272.0 55 18821.0 56 17151.5 57 15482.0 58 14731.5 59 13981.0 60 13373.5 61 12766.0 62 11819.0 63 10872.0 64 8803.5 65 6735.0 66 5820.0 67 4905.0 68 4162.0 69 3419.0 70 2873.0 71 2327.0 72 2026.0 73 1725.0 74 1407.5 75 853.5 76 617.0 77 513.0 78 409.0 79 343.0 80 277.0 81 185.5 82 94.0 83 81.0 84 68.0 85 44.0 86 20.0 87 15.0 88 10.0 89 7.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 340458.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.467666910672907 #Duplication Level Percentage of deduplicated Percentage of total 1 72.72899334285867 21.431537505759064 2 11.210998973817714 6.607239669927123 3 4.071008724153294 3.598893872213782 4 1.9219998801957214 2.26547409087843 5 1.1489998952663303 1.6929173097053134 6 0.8309999239397863 1.4692577376871285 7 0.5949999455375946 1.2273282144879252 8 0.48399995569777704 1.140987958342603 9 0.4289999607321202 1.1377465152791286 >10 6.010999449792015 41.39470130376473 >50 0.513999952951771 9.280546167366195 >100 0.04199999615559218 2.241015863428587 >500 0.004999999542332403 1.1177085036140209 >1k 0.006999999359265365 5.394645287545974 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG 4478 1.3152870544971773 No Hit GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 4363 1.281509026076638 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC 3767 1.1064507222623643 No Hit GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 2099 0.6165224491714103 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1509 0.4432264772747299 No Hit CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 1053 0.3092892515376346 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCCTGTT 1038 0.30488342174365124 No Hit GAATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT 968 0.284322882705062 No Hit GAACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT 841 0.2470201904493359 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTA 691 0.20296189250950192 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTC 658 0.19326906696273843 No Hit CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT 635 0.18651346127863055 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 458 0.13452466970962645 No Hit TAACGAGGGATTGCTTTTAAAACTATCTTTCTTTGAGCTTCTTTATGTTGC 349 0.10250897320668041 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9372198626555993E-4 0.0 0.0 0.1920941790176762 0.0 2 2.9372198626555993E-4 0.0 0.0 1.3752063396953516 0.0 3 5.874439725311199E-4 0.0 0.0 1.6903700309582974 0.0 4 5.874439725311199E-4 0.0 0.0 2.3870785823802056 0.0 5 5.874439725311199E-4 0.0 0.0 4.86814820036539 0.0 6 5.874439725311199E-4 0.0 0.0 5.667659446980244 0.0 7 5.874439725311199E-4 0.0 0.0 6.736513755000617 0.0 8 5.874439725311199E-4 0.0 0.0 8.03682098819825 0.0 9 5.874439725311199E-4 0.0 0.0 8.499433116566507 0.0 10 5.874439725311199E-4 0.0 0.0 10.734363710061153 0.0 11 5.874439725311199E-4 0.0 0.0 12.00001174887945 0.0 12 5.874439725311199E-4 0.0 0.0 14.174141891217126 0.0 13 5.874439725311199E-4 0.0 0.0 14.679637429580154 0.0 14 5.874439725311199E-4 0.0 0.0 14.888473761814966 0.0 15 5.874439725311199E-4 0.0 0.0 15.431859436406253 0.0 16 5.874439725311199E-4 0.0 0.0 16.080103860094344 0.0 17 5.874439725311199E-4 0.0 0.0 16.821458153428615 0.0 18 5.874439725311199E-4 0.0 0.0 17.586897649636665 0.0 19 5.874439725311199E-4 0.0 0.0 18.377890958649818 0.0 20 5.874439725311199E-4 0.0 0.0 18.895135376463468 0.0 21 5.874439725311199E-4 0.0 0.0 19.483166792967122 0.0 22 5.874439725311199E-4 0.0 0.0 20.15667130747405 0.0 23 5.874439725311199E-4 0.0 0.0 20.77378120061799 0.0 24 5.874439725311199E-4 0.0 0.0 21.261359697818822 0.0 25 5.874439725311199E-4 0.0 0.0 21.677857474343384 0.0 26 5.874439725311199E-4 0.0 0.0 22.089949421073964 0.0 27 5.874439725311199E-4 0.0 0.0 22.484418048628612 0.0 28 5.874439725311199E-4 0.0 0.0 22.908258874809814 0.0 29 8.811659587966798E-4 0.0 0.0 23.292153510858903 0.0 30 8.811659587966798E-4 0.0 0.0 23.75065353141944 0.0 31 8.811659587966798E-4 0.0 0.0 24.171263415751724 0.0 32 8.811659587966798E-4 0.0 0.0 24.62594505049081 0.0 33 8.811659587966798E-4 0.0 0.0 25.028637893660893 0.0 34 8.811659587966798E-4 0.0 0.0 25.418113247449025 0.0 35 8.811659587966798E-4 0.0 0.0 25.871913716229315 0.0 36 8.811659587966798E-4 0.0 0.0 26.317196247407903 0.0 37 8.811659587966798E-4 0.0 0.0 26.746617791328152 0.0 38 8.811659587966798E-4 0.0 0.0 27.167815119632966 0.0 39 8.811659587966798E-4 0.0 0.0 27.562577469173878 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCG 20 7.026284E-4 45.000004 1 TTCTATC 20 7.026284E-4 45.000004 22 CGGAAAT 20 7.026284E-4 45.000004 39 CTCACAT 20 7.026284E-4 45.000004 7 AGATCGA 20 7.026284E-4 45.000004 13 CCCTCGC 20 7.026284E-4 45.000004 15 CCGATCG 45 3.8380676E-10 45.000004 40 TAGCGTA 20 7.026284E-4 45.000004 12 TAAACGG 20 7.026284E-4 45.000004 2 TATGAAC 20 7.026284E-4 45.000004 19 TATCTCC 20 7.026284E-4 45.000004 13 CAGATCG 20 7.026284E-4 45.000004 14 AACGAGG 80 0.0 45.000004 2 CTACCGG 40 6.7902874E-9 45.000004 2 GCTAGCG 40 6.7902874E-9 45.000004 1 CGTAAGT 20 7.026284E-4 45.000004 40 ATGCGGA 20 7.026284E-4 45.000004 45 CGTCGGA 20 7.026284E-4 45.000004 31 TGCTACG 20 7.026284E-4 45.000004 1 TCCCCCG 20 7.026284E-4 45.000004 14 >>END_MODULE