SRR3551823_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551823_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470263
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG	9273	1.9718753123252306	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC	8969	1.9072306347724572	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC	7506	1.5961281240497338	No Hit
GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	2766	0.5881815069439866	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCT	2201	0.4680359713607067	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2177	0.46293244418548773	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTATGCT	1964	0.4176386405054193	No Hit
GAACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT	1907	0.4055177634642742	No Hit
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1570	0.3338557360455745	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTC	1503	0.3196083893480882	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTA	1484	0.3155680970010398	No Hit
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	792	0.1684163967822261	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCC	666	0.14162287911232652	No Hit
TCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	560	0.11908230075510938	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	547	0.11631789020186577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	30	2.1627548E-6	45.000004	1
ACGGGCC	30	2.1627548E-6	45.000004	5
CCGATTT	40	6.7993824E-9	45.0	11
GCGAACC	20	7.029032E-4	45.0	33
GCGCCAA	20	7.029032E-4	45.0	40
CGATTTA	20	7.029032E-4	45.0	10
CGATTGC	25	3.8872782E-5	45.0	10
ACGGGTC	20	7.029032E-4	45.0	5
CGCTCGA	55	1.8189894E-12	45.0	41
CTACGCT	25	3.8872782E-5	45.0	38
CACTACG	20	7.029032E-4	45.0	2
ACTACGC	25	3.8872782E-5	45.0	37
AACTCGG	20	7.029032E-4	45.0	31
CGATATA	20	7.029032E-4	45.0	21
TACGGCT	945	0.0	42.619045	7
CGTTTTT	1420	0.0	42.306335	1
TACGGTT	70	0.0	41.785717	33
CCCGATT	60	3.6379788E-12	41.250004	40
CCTCGTC	115	0.0	41.08696	36
ACGGCTG	975	0.0	41.076923	8