##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551823_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 470263 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.696474100662822 30.0 25.0 31.0 16.0 33.0 2 27.695385348198773 31.0 25.0 33.0 16.0 34.0 3 27.504037102642563 30.0 25.0 33.0 16.0 34.0 4 31.684514835315557 35.0 28.0 35.0 19.0 37.0 5 33.27012756691468 35.0 32.0 35.0 28.0 37.0 6 33.081499076048935 35.0 32.0 35.0 28.0 37.0 7 34.08475470109279 35.0 33.0 37.0 31.0 37.0 8 34.18134533229278 35.0 35.0 37.0 31.0 37.0 9 36.39157450192764 39.0 37.0 39.0 32.0 39.0 10 35.47421123924272 37.0 34.0 39.0 31.0 39.0 11 36.02442675694239 37.0 35.0 39.0 31.0 39.0 12 36.069327163736034 37.0 35.0 39.0 32.0 39.0 13 36.120334791382696 37.0 35.0 39.0 32.0 39.0 14 37.0308359364866 39.0 36.0 40.0 32.0 41.0 15 37.23086230471034 39.0 36.0 40.0 32.0 41.0 16 36.81750212115348 38.0 35.0 40.0 32.0 41.0 17 36.9235597952635 38.0 35.0 40.0 32.0 41.0 18 36.783774185934256 38.0 35.0 40.0 32.0 41.0 19 36.37060325817681 38.0 34.0 40.0 30.0 41.0 20 36.629026736102986 38.0 35.0 40.0 31.0 41.0 21 36.92708760842337 39.0 35.0 40.0 32.0 41.0 22 37.29306792156729 39.0 35.0 40.0 32.0 41.0 23 37.628078330636264 39.0 36.0 40.0 33.0 41.0 24 37.67259171995245 39.0 36.0 41.0 33.0 41.0 25 36.776905688944275 38.0 35.0 40.0 31.0 41.0 26 37.05866504487914 39.0 35.0 40.0 32.0 41.0 27 37.3008656857971 39.0 35.0 40.0 33.0 41.0 28 37.31764565785529 39.0 35.0 40.0 32.0 41.0 29 37.425797904576804 39.0 36.0 41.0 33.0 41.0 30 37.05016554566274 39.0 35.0 40.0 32.0 41.0 31 37.21959414200139 39.0 35.0 40.0 33.0 41.0 32 37.14468712188712 39.0 35.0 40.0 33.0 41.0 33 37.1384289216885 40.0 35.0 41.0 32.0 41.0 34 37.16776357059773 40.0 36.0 41.0 33.0 41.0 35 37.0606979498706 40.0 35.0 41.0 32.0 41.0 36 36.95192264753978 40.0 35.0 41.0 31.0 41.0 37 37.00108875246405 40.0 35.0 41.0 32.0 41.0 38 36.89504596364162 40.0 35.0 41.0 31.0 41.0 39 36.87530807229146 40.0 35.0 41.0 32.0 41.0 40 36.68936105966236 39.0 35.0 41.0 31.0 41.0 41 36.56829050977857 39.0 35.0 41.0 31.0 41.0 42 36.76807020752217 39.0 35.0 41.0 31.0 41.0 43 36.733079149327075 39.0 35.0 41.0 32.0 41.0 44 36.845248297229425 39.0 35.0 41.0 32.0 41.0 45 36.85831332679798 39.0 35.0 41.0 32.0 41.0 46 36.6872601076419 39.0 35.0 41.0 32.0 41.0 47 36.55421966006256 39.0 35.0 41.0 31.0 41.0 48 36.655537433308595 39.0 35.0 41.0 32.0 41.0 49 36.6628482359871 39.0 35.0 41.0 32.0 41.0 50 36.52479144648846 39.0 35.0 41.0 31.0 41.0 51 35.67011650927247 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 11.0 10 17.0 11 17.0 12 14.0 13 10.0 14 24.0 15 40.0 16 51.0 17 74.0 18 177.0 19 447.0 20 792.0 21 1117.0 22 1603.0 23 2118.0 24 2955.0 25 3954.0 26 4543.0 27 4750.0 28 5065.0 29 6093.0 30 7845.0 31 11065.0 32 16172.0 33 25724.0 34 35552.0 35 38078.0 36 56455.0 37 93116.0 38 115987.0 39 36389.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.266561477301 18.13708499286569 22.1110314866362 17.485322043197105 2 27.784877823685893 30.178857362794865 24.20517880420105 17.831086009318188 3 28.901061746299412 28.29055230796384 26.758856214501247 16.049529731235502 4 26.88261674850031 22.515911309203574 32.74337976834239 17.858092173953725 5 29.430340043762747 25.990775374630793 24.83780352696257 19.741081054643892 6 22.444249281784874 36.35986671288194 25.86318719525032 15.332696810082869 7 73.05890533595031 5.117987168882094 16.76848912204447 5.054618373123125 8 72.7716192853786 10.285308433791304 11.20862155857467 5.734450722255419 9 67.67298299036922 7.068597784643912 11.713870748921348 13.544548476065522 10 39.390085973168205 26.682303306872964 19.82103631372232 14.106574406236511 11 30.048930066792412 23.055821954948613 28.06982475763562 18.825423220623353 12 27.368302418008643 19.793392208189886 31.478342969784993 21.359962404016475 13 23.77393075789505 22.96906199296989 35.2285848557084 18.02842239342666 14 18.568333039171698 30.165885897891183 28.275241726438182 22.990539336498937 15 16.39401781556278 25.196113664056067 38.91949823821989 19.49037028216126 16 18.41884222233091 26.09390915296334 31.361387138686226 24.125861486019527 17 18.72122620746263 26.832857358541922 30.77490680746731 23.671009626528132 18 19.40892649432339 27.131626345257864 30.878678526696763 22.58076863372198 19 21.133706032581767 28.171470007208733 27.18287426397569 23.51194969623381 20 23.49855293739886 26.962146713647467 32.31255701596766 17.22674333298601 21 22.078283853928546 29.938140997697033 29.132208997943703 18.851366150430714 22 19.510571743896502 24.756572386090337 30.48294252365166 25.249913346361502 23 20.997399327610296 27.556707629560478 30.53419044236948 20.91170260045974 24 21.804181915226163 24.68639888743108 29.638734070084187 23.870685127258575 25 19.046788711848475 31.586792922258393 27.8933277761593 21.47309058973383 26 19.871008350646342 27.763613127122483 29.756115195114223 22.609263327116956 27 22.402570476520587 29.09095548661068 27.500781477598707 21.005692559270024 28 17.855965704297383 27.954782749227558 32.83651913929015 21.352732407184916 29 23.764361644441514 23.87089777422421 29.951750403497616 22.412990177836658 30 19.266027733417257 31.733094034614673 28.796864733138687 20.20401349882938 31 21.803331327363622 26.424575184524407 29.25937188339291 22.51272160471906 32 24.712767111169708 29.133910173668774 27.728101083861585 18.42522163129993 33 20.968054046352787 28.856405883516246 26.403523134926626 23.77201693520434 34 23.23295687732184 24.75168150588075 30.8072291462437 21.20813247055371 35 23.258049219266667 26.55131277604234 26.981922881451442 23.20871512323955 36 22.08721502648518 27.44634385439637 27.90225894871593 22.564182170402518 37 20.413683406944624 27.448257677087078 33.1210407793086 19.0170181366597 38 19.843789539045172 28.239304389246016 28.400916083127953 23.515989988580856 39 21.95324743813568 25.30690273315145 32.16349149305814 20.576358335654728 40 23.570640258748828 25.86999189815061 30.01809625677546 20.5412715863251 41 19.631993161273588 26.197468225227162 29.048426093483858 25.122112520015392 42 22.885066441544414 24.129051190504036 30.822327080803717 22.16355528714783 43 23.133863391336337 25.125089577534272 26.688257421910716 25.052789609218674 44 21.23131098980783 25.53209586975799 29.08351284281349 24.153080297620694 45 20.748602377818372 23.948088622749395 28.703725362190944 26.599583637241288 46 23.702481377441984 28.141912078985587 27.127373405945182 21.028233137627243 47 19.310258302269155 25.379415348432687 34.083906239699914 21.226420109598244 48 21.306800662607944 24.59793774972728 29.309131273351298 24.78613031431348 49 20.133840000170117 22.592889510763126 34.21553471142744 23.057735777639323 50 20.191467327856966 23.296963613977713 30.76618828187631 25.74538077628901 51 20.61144508498436 23.2588998071292 27.68408316197532 28.44557194591112 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 190.0 1 369.5 2 549.0 3 2241.5 4 3934.0 5 2757.5 6 1581.0 7 1532.5 8 1484.0 9 1484.5 10 1485.0 11 1456.0 12 1427.0 13 1351.5 14 1276.0 15 1248.5 16 1221.0 17 1230.0 18 1239.0 19 1310.0 20 1381.0 21 1464.0 22 1547.0 23 1678.0 24 1809.0 25 2342.5 26 4251.0 27 5626.0 28 5415.5 29 5205.0 30 6692.5 31 8180.0 32 8854.0 33 9528.0 34 11099.5 35 12671.0 36 13798.5 37 14926.0 38 16694.5 39 18463.0 40 20999.5 41 23536.0 42 26028.0 43 28520.0 44 49334.5 45 70149.0 46 59242.5 47 48336.0 48 46568.0 49 44800.0 50 38669.0 51 32538.0 52 28939.5 53 25341.0 54 23042.5 55 20744.0 56 18967.5 57 17191.0 58 16881.5 59 16572.0 60 15519.0 61 14466.0 62 12855.5 63 11245.0 64 9255.0 65 7265.0 66 5842.0 67 4419.0 68 3656.0 69 2893.0 70 2420.5 71 1948.0 72 1671.5 73 1395.0 74 1179.5 75 787.0 76 610.0 77 465.0 78 320.0 79 236.5 80 153.0 81 155.5 82 158.0 83 114.0 84 70.0 85 39.0 86 8.0 87 9.5 88 11.0 89 9.0 90 7.0 91 5.0 92 3.0 93 2.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 470263.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.626358284482436 #Duplication Level Percentage of deduplicated Percentage of total 1 73.41094967357641 23.21720996380636 2 10.787327052763818 6.823277406051968 3 3.978372033275145 3.774642579399739 4 1.9993237139562012 2.5292531241696357 5 1.2548171015597773 1.984264761771265 6 0.8930847151212022 1.694701030729084 7 0.6617826253337706 1.4650842090675862 8 0.5636686162059026 1.426142848787704 9 0.4424715573985392 1.2594387604481223 >10 5.696216219407405 39.22849046744918 >50 0.26876775579639905 5.246170103895272 >100 0.033089497572923496 1.9787398637269866 >500 0.0027011834753406937 0.5478108743075791 >1k 0.005402366950681387 3.325735257199853 >5k 0.0020258876065055204 5.499038749189687 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG 9273 1.9718753123252306 No Hit GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC 8969 1.9072306347724572 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC 7506 1.5961281240497338 No Hit GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 2766 0.5881815069439866 Illumina Single End Adapter 2 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCT 2201 0.4680359713607067 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2177 0.46293244418548773 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTATGCT 1964 0.4176386405054193 No Hit GAACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT 1907 0.4055177634642742 No Hit CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 1570 0.3338557360455745 Illumina Single End Adapter 2 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTC 1503 0.3196083893480882 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTA 1484 0.3155680970010398 No Hit CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT 792 0.1684163967822261 Illumina Single End Adapter 2 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCC 666 0.14162287911232652 No Hit TCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 560 0.11908230075510938 Illumina Single End Adapter 2 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 547 0.11631789020186577 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17224404216364034 0.0 2 0.0 0.0 0.0 1.3230894201755188 0.0 3 0.0 0.0 0.0 1.6952216100352355 0.0 4 0.0 0.0 0.0 2.591315923217434 0.0 5 0.0 0.0 0.0 5.743381894812052 0.0 6 0.0 0.0 0.0 6.558245067122015 0.0 7 0.0 0.0 0.0 7.773735122686666 0.0 8 0.0 0.0 0.0 9.004110465845708 0.0 9 0.0 0.0 0.0 9.35901825148906 0.0 10 0.0 0.0 0.0 12.22188434982127 0.0 11 0.0 0.0 0.0 13.598986099267856 0.0 12 0.0 0.0 0.0 16.261538755972722 0.0 13 0.0 0.0 0.0 16.82547850883442 0.0 14 0.0 0.0 0.0 17.030044889774445 0.0 15 0.0 0.0 0.0 17.647359031010307 0.0 16 0.0 0.0 0.0 18.349519311534184 0.0 17 0.0 0.0 0.0 19.183946004682486 0.0 18 0.0 0.0 0.0 19.9947688846454 0.0 19 0.0 0.0 0.0 20.95019170123952 0.0 20 0.0 0.0 0.0 21.544539970186896 0.0 21 0.0 0.0 0.0 22.184607336745607 0.0 22 0.0 0.0 0.0 22.936314360262237 0.0 23 0.0 0.0 0.0 23.646342578514577 0.0 24 0.0 0.0 0.0 24.161798823211694 0.0 25 0.0 0.0 0.0 24.63344979298818 0.0 26 0.0 0.0 0.0 25.0604448999815 0.0 27 0.0 0.0 0.0 25.54655586342111 0.0 28 0.0 0.0 0.0 25.981844202074157 0.0 29 0.0 0.0 0.0 26.428402829905817 0.0 30 0.0 0.0 0.0 26.942370545843495 0.0 31 0.0 0.0 0.0 27.43762532880537 0.0 32 0.0 0.0 0.0 27.894603657953102 0.0 33 0.0 0.0 0.0 28.330955231434324 0.0 34 0.0 0.0 0.0 28.762415924705962 0.0 35 0.0 0.0 0.0 29.251716592630082 0.0 36 0.0 0.0 0.0 29.72506873813164 0.0 37 0.0 0.0 0.0 30.21862234536844 0.0 38 0.0 0.0 0.0 30.676451262378713 0.0 39 0.0 0.0 0.0 31.152142524502246 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTGCG 30 2.1627548E-6 45.000004 1 ACGGGCC 30 2.1627548E-6 45.000004 5 CCGATTT 40 6.7993824E-9 45.0 11 GCGAACC 20 7.029032E-4 45.0 33 GCGCCAA 20 7.029032E-4 45.0 40 CGATTTA 20 7.029032E-4 45.0 10 CGATTGC 25 3.8872782E-5 45.0 10 ACGGGTC 20 7.029032E-4 45.0 5 CGCTCGA 55 1.8189894E-12 45.0 41 CTACGCT 25 3.8872782E-5 45.0 38 CACTACG 20 7.029032E-4 45.0 2 ACTACGC 25 3.8872782E-5 45.0 37 AACTCGG 20 7.029032E-4 45.0 31 CGATATA 20 7.029032E-4 45.0 21 TACGGCT 945 0.0 42.619045 7 CGTTTTT 1420 0.0 42.306335 1 TACGGTT 70 0.0 41.785717 33 CCCGATT 60 3.6379788E-12 41.250004 40 CCTCGTC 115 0.0 41.08696 36 ACGGCTG 975 0.0 41.076923 8 >>END_MODULE