SRR3551821_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551821_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	536618
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGC	4737	0.8827508581523542	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC	4704	0.8766012321614258	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCG	4503	0.8391444193075893	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1891	0.35239220451047115	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1421	0.2648066222154307	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAACGGAAT	1280	0.23853094752691859	No Hit
GAACTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCT	1175	0.21896395573760105	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCT	926	0.17256223235150517	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAACGGAATCGTA	893	0.16641260636057678	No Hit
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	709	0.13212378265358224	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTC	705	0.13137837344256062	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCC	565	0.10528905105680392	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.0299226E-4	45.0	1
ACACGAT	20	7.0299226E-4	45.0	31
TTAATCG	20	7.0299226E-4	45.0	20
TTGTACG	35	1.210301E-7	45.0	1
TCGATAG	25	3.888016E-5	45.0	1
CCGCTAG	20	7.0299226E-4	45.0	1
GTTACGC	25	3.888016E-5	45.0	43
GCGATTC	20	7.0299226E-4	45.0	9
TTACGAG	45	3.8380676E-10	45.0	1
ATCGGTT	40	6.8030204E-9	45.0	28
GCGTATG	20	7.0299226E-4	45.0	1
CCGCATA	25	3.888016E-5	45.0	32
GCGTAAC	20	7.0299226E-4	45.0	36
AATCGGT	40	6.8030204E-9	45.0	27
CTTACGG	25	3.888016E-5	45.0	2
TACGGCT	630	0.0	41.785713	7
TACGAAT	60	3.6379788E-12	41.250004	12
CGAATAT	60	3.6379788E-12	41.250004	14
CGTTTTT	1090	0.0	41.077984	1
TTAACGG	55	6.002665E-11	40.909092	2