SRR3551817_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551817_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	687507
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC	6851	0.9964989447380171	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCG	6437	0.9362813760441713	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGC	5632	0.8191916591394707	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2690	0.3912687434455213	No Hit
GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	1853	0.2695245284775282	No Hit
GAACTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCT	1510	0.21963412736161234	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTACATCAT	1438	0.2091615067192043	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCT	1345	0.19563437172276066	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTC	1136	0.16523468124688184	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTACATCATCGTA	1062	0.15447115447551807	No Hit
CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	726	0.10559892481094738	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAACC	25	3.889163E-5	45.000004	33
TAACGCG	25	3.889163E-5	45.000004	1
ACGTAAG	25	3.889163E-5	45.000004	1
CGCGTTA	25	3.889163E-5	45.000004	15
CCATTCG	25	3.889163E-5	45.000004	10
TTGTGCG	40	6.8084773E-9	45.0	1
AAGACCG	20	7.031307E-4	45.0	36
TCGATAG	20	7.031307E-4	45.0	1
AACGCGT	20	7.031307E-4	45.0	44
TTGCGAG	40	6.8084773E-9	45.0	1
CATACGT	20	7.031307E-4	45.0	31
CTCGCGT	20	7.031307E-4	45.0	11
TCGTAGG	20	7.031307E-4	45.0	2
TTACGGA	20	7.031307E-4	45.0	26
ATCGGTA	20	7.031307E-4	45.0	24
CTAGGCG	20	7.031307E-4	45.0	1
TTTAGCG	30	2.1642245E-6	44.999996	1
CGTTTTT	1800	0.0	42.125	1
GCTACGA	100	0.0	40.500004	10
ACGTTAG	45	1.9263098E-8	40.000004	1