SRR3551811_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551811_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	352021
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	5802	1.6481971246033618	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG	5505	1.563827158038867	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC	5391	1.5314427264282529	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2109	0.5991119847963615	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	2038	0.578942733530102	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCAATCCT	1476	0.4192931671690041	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	1118	0.31759468895321585	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	1085	0.30822024822382754	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	978	0.2778243343436897	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTA	925	0.2627684143843691	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTC	808	0.22953176088926514	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT	629	0.17868252178137098	TruSeq Adapter, Index 22 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCC	434	0.12328809928953102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCGG	45	3.8380676E-10	45.0	2
ACGGGTC	20	7.0266123E-4	45.0	5
TGCGCGT	20	7.0266123E-4	45.0	28
GTGCTTA	20	7.0266123E-4	45.0	39
TACGAGA	20	7.0266123E-4	45.0	34
CGCTAAT	20	7.0266123E-4	45.0	19
CAGTCTA	20	7.0266123E-4	45.0	17
TAGGCAC	20	7.0266123E-4	45.0	38
AGTAGCG	20	7.0266123E-4	45.0	1
GTAGTAA	20	7.0266123E-4	45.0	40
GTTGCGC	20	7.0266123E-4	45.0	26
CCCGAAA	20	7.0266123E-4	45.0	36
TTAATCG	30	2.1611959E-6	44.999996	20
GTTAGCG	25	3.8852748E-5	44.999996	1
TCGATCT	25	3.8852748E-5	44.999996	33
ACGGCCT	30	2.1611959E-6	44.999996	8
ATACGAG	25	3.8852748E-5	44.999996	1
ATCGATC	25	3.8852748E-5	44.999996	32
TAACTCG	25	3.8852748E-5	44.999996	1
TAATCGT	30	2.1611959E-6	44.999996	21