##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551811_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 352021 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.514287499893474 28.0 25.0 31.0 16.0 33.0 2 27.652265063731992 31.0 25.0 33.0 16.0 34.0 3 27.721087662383777 31.0 25.0 33.0 16.0 34.0 4 31.76682072944512 35.0 28.0 37.0 19.0 37.0 5 33.32113709125308 35.0 32.0 35.0 28.0 37.0 6 33.06932825030325 35.0 32.0 35.0 28.0 37.0 7 33.9989943781763 35.0 33.0 37.0 31.0 37.0 8 33.97911772309038 35.0 35.0 37.0 30.0 37.0 9 36.127535005013904 39.0 35.0 39.0 31.0 39.0 10 35.449268651586124 37.0 34.0 39.0 31.0 39.0 11 35.993591291428636 37.0 35.0 39.0 31.0 39.0 12 35.90770721064936 37.0 35.0 39.0 31.0 39.0 13 35.96335161822732 37.0 35.0 39.0 31.0 39.0 14 36.855554072058204 39.0 36.0 40.0 31.0 41.0 15 37.07577956996884 39.0 36.0 40.0 32.0 41.0 16 36.568500174705484 38.0 34.0 40.0 31.0 41.0 17 36.746495237500035 38.0 35.0 40.0 32.0 41.0 18 36.591586865556316 38.0 35.0 40.0 31.0 41.0 19 36.1402700407078 38.0 34.0 40.0 30.0 41.0 20 36.47764479960002 38.0 35.0 40.0 31.0 41.0 21 36.75454589356885 38.0 35.0 40.0 32.0 41.0 22 37.12050133372725 39.0 35.0 40.0 32.0 41.0 23 37.449129455344995 39.0 35.0 40.0 33.0 41.0 24 37.500796827462 39.0 35.0 41.0 33.0 41.0 25 36.63954707247579 38.0 35.0 40.0 31.0 41.0 26 36.866837489808844 39.0 35.0 40.0 32.0 41.0 27 37.1218393220859 39.0 35.0 40.0 33.0 41.0 28 37.11532266540917 39.0 35.0 40.0 32.0 41.0 29 37.229688001568086 39.0 35.0 41.0 33.0 41.0 30 36.772641404916186 39.0 35.0 40.0 31.0 41.0 31 37.00783191911846 39.0 35.0 40.0 32.0 41.0 32 36.84647222750915 39.0 35.0 40.0 32.0 41.0 33 36.78531394433855 39.0 35.0 41.0 31.0 41.0 34 36.82239695927232 39.0 35.0 41.0 32.0 41.0 35 36.665892091664986 39.0 35.0 41.0 31.0 41.0 36 36.60106073217223 39.0 35.0 41.0 31.0 41.0 37 36.6020038577244 39.0 35.0 41.0 31.0 41.0 38 36.50164336786726 39.0 35.0 41.0 31.0 41.0 39 36.47593751509143 39.0 35.0 40.0 31.0 41.0 40 36.25070947471884 39.0 35.0 40.0 30.0 41.0 41 36.1376707639601 39.0 35.0 40.0 30.0 41.0 42 36.32265120546786 39.0 35.0 40.0 31.0 41.0 43 36.32828439212433 39.0 35.0 40.0 31.0 41.0 44 36.41233903659157 39.0 35.0 40.0 31.0 41.0 45 36.41043574104954 39.0 35.0 40.0 31.0 41.0 46 36.23502859204422 39.0 35.0 40.0 31.0 41.0 47 36.10574653216712 39.0 35.0 40.0 30.0 41.0 48 36.16829961848867 39.0 35.0 40.0 31.0 41.0 49 36.16072904741478 39.0 35.0 40.0 31.0 41.0 50 36.027773911215526 38.0 35.0 40.0 31.0 41.0 51 35.16010124395988 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 6.0 10 14.0 11 10.0 12 14.0 13 16.0 14 17.0 15 39.0 16 41.0 17 78.0 18 126.0 19 266.0 20 660.0 21 903.0 22 1257.0 23 1649.0 24 2368.0 25 3288.0 26 3859.0 27 4145.0 28 4611.0 29 5367.0 30 6714.0 31 9208.0 32 13368.0 33 21957.0 34 30328.0 35 28709.0 36 42009.0 37 67351.0 38 79613.0 39 24029.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.03651770775039 17.84126515179492 18.899440658369812 18.222776482084875 2 29.776916718036706 29.109058834558166 22.92817758031481 18.185846867090316 3 31.00894548904753 26.112362614730372 25.99305155090179 16.885640345320308 4 27.4699520767227 23.404853687706133 31.101269526533926 18.023924709037246 5 28.49432278187949 26.895554526576536 24.81357646276785 19.796546228776123 6 23.696597646163156 36.60719104826132 25.755281645129124 13.940929660446393 7 71.86304226168325 6.17377940520594 16.813485559100165 5.149692774010641 8 70.76538047446033 10.835149039403898 11.991330062695123 6.408140423440647 9 65.34894225060437 7.843850224844541 12.656915354481693 14.1502921700694 10 43.10055366015096 21.910624650233935 19.99767059351573 14.991151096099381 11 34.282329747373026 22.64296732297221 24.638586902485933 18.436116027168833 12 29.230926564040217 19.83404399169368 29.788279676496572 21.14674976776954 13 24.774942404004307 24.149979688711753 31.742992605554782 19.33208530172916 14 20.100221293616006 29.532044963226628 27.886404504276737 22.481329238880633 15 18.337542362529508 24.189181895398285 37.14352268756693 20.32975305450527 16 20.419804500299698 24.059928242917326 30.8353762985731 24.68489095820988 17 20.080336116311244 25.401041415142846 29.862707054408688 24.655915414137226 18 20.195386070717372 24.730910939972333 31.46772493686456 23.605978052445735 19 22.833580951136437 26.561767621818017 27.191275520494518 23.41337590655103 20 25.017541567122414 25.76920126924246 31.42000051133313 17.793256652301995 21 23.25060152661347 29.034915530607545 28.09974404936069 19.61473889341829 22 20.8311435965468 23.440078858931713 30.034003653191142 25.694773891330346 23 22.174813434425786 27.173094786958735 29.291718391800487 21.36037338681499 24 22.822786140599565 24.43405365020837 29.385178725132878 23.35798148405919 25 19.75081032097517 29.50818275046091 28.250871396876892 22.49013553168703 26 19.916141366566197 25.9589626755222 30.260694674465444 23.864201283446157 27 21.94300908184455 27.174515156766216 29.196269540737624 21.68620622065161 28 18.08812542433548 26.56148354785652 32.21398723371617 23.13640379409183 29 23.119075282440534 23.721028006851864 30.24450245866014 22.915394252047463 30 19.599114825535978 28.726695282383723 30.7010093147852 20.973180577295107 31 22.421673706966345 25.257584064587057 26.883339346232184 25.437402882214418 32 24.49086844250769 28.99883813749748 26.030265239857847 20.48002818013698 33 21.82511838782345 27.06173779405206 26.008959692745602 25.104184125378882 34 22.45150147292349 24.71528687209002 29.089741805176395 23.743469849810097 35 20.889378758653603 24.56728433815028 28.281551384718522 26.26178551847759 36 22.102942722167143 26.828797145624833 26.62596833711625 24.44229179509177 37 19.087781694842068 27.561139818363113 31.74327667951628 21.60780180727854 38 18.95881211632261 28.821291911562096 25.55273691058204 26.667159061533262 39 22.115441976472994 28.066507395865585 28.324730626866014 21.493320000795407 40 20.756432144673187 25.714943142596606 29.32836393283355 24.200260779896652 41 18.659966308828167 24.74255797239369 28.472733160805745 28.124742557972393 42 19.08352058541962 23.47786069581076 29.553918658261864 27.884700060507754 43 22.117146420241973 24.332923319915572 26.4288210078376 27.121109252004853 44 20.87886802207823 24.594555438453956 28.40796429758452 26.118612241883298 45 20.29594825308717 25.07179969376827 27.126222583311794 27.506029469832765 46 23.792330571187513 27.304621031131663 26.062649671468463 22.840398726212356 47 18.383278270330464 24.816133128421317 33.362782334008486 23.43780626723974 48 20.810974345280535 24.070723053454195 29.422392414088932 25.695910187176334 49 20.064996122390426 22.35406410413015 32.87786808173376 24.703071691745663 50 20.54792185693467 23.25003337869048 29.795665599495486 26.406379164879368 51 19.900801372645383 23.437522193278244 27.274225117251525 29.387451316824848 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 96.0 1 272.5 2 449.0 3 2160.5 4 3872.0 5 2603.5 6 1335.0 7 1354.5 8 1374.0 9 1329.0 10 1284.0 11 1278.5 12 1273.0 13 1263.0 14 1253.0 15 1235.0 16 1217.0 17 1147.0 18 1077.0 19 1051.5 20 1026.0 21 1008.0 22 990.0 23 1011.5 24 1033.0 25 1565.0 26 2501.0 27 2905.0 28 3323.0 29 3741.0 30 4237.5 31 4734.0 32 5371.5 33 6009.0 34 6948.5 35 7888.0 36 8584.0 37 9280.0 38 10137.5 39 10995.0 40 12337.0 41 13679.0 42 16185.5 43 18692.0 44 20418.5 45 22145.0 46 34368.0 47 46591.0 48 38984.0 49 31377.0 50 31961.5 51 32546.0 52 28755.5 53 24965.0 54 23215.5 55 21466.0 56 19242.5 57 17019.0 58 15850.5 59 14682.0 60 13944.5 61 13207.0 62 11882.0 63 10557.0 64 8901.5 65 7246.0 66 5869.5 67 4493.0 68 4023.5 69 3554.0 70 2758.5 71 1963.0 72 1731.0 73 1499.0 74 1235.5 75 808.5 76 645.0 77 540.0 78 435.0 79 331.0 80 227.0 81 147.5 82 68.0 83 50.0 84 32.0 85 25.5 86 19.0 87 14.0 88 9.0 89 5.5 90 2.0 91 2.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 352021.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.199219371289235 #Duplication Level Percentage of deduplicated Percentage of total 1 71.82621186564091 20.972693168735475 2 11.37578832574986 6.643282776898427 3 3.8934241422797213 3.4105483690769764 4 1.9227460389652253 2.245707335480922 5 1.2204386413038804 1.7817927808315093 6 0.814948280214595 1.4277512166144508 7 0.6571511541330753 1.34318104967393 8 0.5522865408027312 1.2901068688567545 9 0.4763845869793234 1.2519052254279255 >10 6.996961030272157 45.60370244055793 >50 0.21072777296194659 3.839409311302594 >100 0.04094710280303227 2.064345930025145 >500 0.003994839297856807 0.9739956782432526 >1k 0.004993549122321009 2.2821826880035014 >5k 0.0029961294733926052 4.869395160271207 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC 5802 1.6481971246033618 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG 5505 1.563827158038867 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC 5391 1.5314427264282529 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2109 0.5991119847963615 No Hit GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC 2038 0.578942733530102 TruSeq Adapter, Index 20 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCAATCCT 1476 0.4192931671690041 No Hit GAACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT 1118 0.31759468895321585 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT 1085 0.30822024822382754 No Hit CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC 978 0.2778243343436897 TruSeq Adapter, Index 20 (95% over 21bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTA 925 0.2627684143843691 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTC 808 0.22953176088926514 No Hit CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT 629 0.17868252178137098 TruSeq Adapter, Index 22 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCC 434 0.12328809928953102 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1843640010113033 0.0 2 0.0 0.0 0.0 1.2340172887412968 0.0 3 0.0 0.0 0.0 1.5152505106229457 0.0 4 0.0 0.0 0.0 2.189926169177407 0.0 5 0.0 0.0 0.0 4.797725135716335 0.0 6 0.0 0.0 0.0 5.376383795284941 0.0 7 0.0 0.0 0.0 6.236275676735195 0.0 8 0.0 0.0 0.0 7.236216021203281 0.0 9 0.0 0.0 0.0 7.551538118464523 0.0 10 0.0 0.0 0.0 9.938043468997588 0.0 11 0.0 0.0 0.0 11.199047784081063 0.0 12 0.0 0.0 0.0 13.73469196439985 0.0 13 0.0 0.0 0.0 14.242048059632806 0.0 14 0.0 0.0 0.0 14.46334167563867 0.0 15 0.0 0.0 0.0 15.02722848920945 0.0 16 0.0 0.0 0.0 15.676621565190713 0.0 17 0.0 0.0 0.0 16.387658690816743 0.0 18 0.0 0.0 0.0 17.09187804136685 0.0 19 0.0 0.0 0.0 18.01739100792282 0.0 20 0.0 0.0 0.0 18.56991486303374 0.0 21 0.0 0.0 0.0 19.152550558063297 0.0 22 0.0 0.0 0.0 19.795978080853132 0.0 23 0.0 0.0 0.0 20.414123021069766 0.0 24 0.0 0.0 0.0 20.934546518531565 0.0 25 0.0 0.0 0.0 21.379974490158258 0.0 26 0.0 0.0 0.0 21.788188772828892 0.0 27 0.0 0.0 0.0 22.247252294607424 0.0 28 0.0 0.0 0.0 22.65461435539357 0.0 29 0.0 0.0 0.0 23.099758253058766 0.0 30 0.0 0.0 0.0 23.586661023063964 0.0 31 0.0 0.0 0.0 24.03350936449814 0.0 32 0.0 0.0 0.0 24.457915862974083 0.0 33 0.0 0.0 0.0 24.881754213527035 0.0 34 0.0 0.0 0.0 25.292809235812637 0.0 35 0.0 0.0 0.0 25.748463870053207 0.0 36 0.0 0.0 0.0 26.182812957181532 0.0 37 0.0 0.0 0.0 26.618866488078837 0.0 38 0.0 0.0 0.0 27.058044832552604 0.0 39 0.0 0.0 0.0 27.506029469832765 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCGG 45 3.8380676E-10 45.0 2 ACGGGTC 20 7.0266123E-4 45.0 5 TGCGCGT 20 7.0266123E-4 45.0 28 GTGCTTA 20 7.0266123E-4 45.0 39 TACGAGA 20 7.0266123E-4 45.0 34 CGCTAAT 20 7.0266123E-4 45.0 19 CAGTCTA 20 7.0266123E-4 45.0 17 TAGGCAC 20 7.0266123E-4 45.0 38 AGTAGCG 20 7.0266123E-4 45.0 1 GTAGTAA 20 7.0266123E-4 45.0 40 GTTGCGC 20 7.0266123E-4 45.0 26 CCCGAAA 20 7.0266123E-4 45.0 36 TTAATCG 30 2.1611959E-6 44.999996 20 GTTAGCG 25 3.8852748E-5 44.999996 1 TCGATCT 25 3.8852748E-5 44.999996 33 ACGGCCT 30 2.1611959E-6 44.999996 8 ATACGAG 25 3.8852748E-5 44.999996 1 ATCGATC 25 3.8852748E-5 44.999996 32 TAACTCG 25 3.8852748E-5 44.999996 1 TAATCGT 30 2.1611959E-6 44.999996 21 >>END_MODULE