SRR3551809_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551809_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	345146
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG	5225	1.513852108962584	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC	4793	1.3886876857909407	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	4545	1.3168340354516639	No Hit
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1926	0.5580247199735764	TruSeq Adapter, Index 15 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1680	0.4867505345563906	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATAAGTGT	1341	0.3885312302619761	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	1213	0.35144547524815584	No Hit
GAACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	833	0.241347140050877	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	803	0.2326551662195129	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC	704	0.2039716525760113	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTA	675	0.19556941120569266	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	461	0.13356666454196195	TruSeq Adapter, Index 21 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC	432	0.1251644231716433	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	404	0.11705191426237013	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	356	0.10314475613218754	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGCGA	25	3.8851133E-5	45.000004	41
TCGATAG	35	1.2086275E-7	45.000004	1
TAGGACG	30	2.1610704E-6	45.000004	1
TATACGG	35	1.2086275E-7	45.000004	2
ATACCTC	25	3.8851133E-5	45.000004	13
ATACCGG	30	2.1610704E-6	45.000004	2
TGCGTTG	30	2.1610704E-6	45.000004	1
CTAGATT	20	7.02642E-4	45.0	14
AAGTACG	40	6.7921064E-9	45.0	1
ACGTTGA	20	7.02642E-4	45.0	11
AATGCGT	20	7.02642E-4	45.0	39
TCGCTTG	20	7.02642E-4	45.0	1
TATTACG	20	7.02642E-4	45.0	28
TTAACGG	20	7.02642E-4	45.0	2
CGTGTGA	20	7.02642E-4	45.0	43
TTACGGT	20	7.02642E-4	45.0	30
CAATCCG	20	7.02642E-4	45.0	25
GGCCTAT	20	7.02642E-4	45.0	8
GCTTTAA	20	7.02642E-4	45.0	33
AGTACGG	65	0.0	44.999996	2