##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551809_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 345146 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.43814211956679 28.0 25.0 31.0 16.0 33.0 2 27.637463566143023 31.0 25.0 33.0 16.0 34.0 3 27.586418501156032 31.0 25.0 33.0 16.0 34.0 4 31.69633430490285 35.0 28.0 37.0 19.0 37.0 5 33.200561501509505 35.0 32.0 35.0 28.0 37.0 6 33.00050123715761 35.0 32.0 35.0 28.0 37.0 7 34.03182131619663 35.0 33.0 37.0 31.0 37.0 8 33.87580907789747 35.0 35.0 37.0 30.0 37.0 9 36.16585734732548 39.0 35.0 39.0 31.0 39.0 10 35.442091173010844 37.0 34.0 39.0 31.0 39.0 11 35.99758363127488 37.0 35.0 39.0 31.0 39.0 12 35.9984760072549 37.0 35.0 39.0 31.0 39.0 13 35.98477745649667 37.0 35.0 39.0 31.0 39.0 14 36.87017088420552 39.0 36.0 40.0 31.0 41.0 15 37.10570309376322 39.0 36.0 40.0 32.0 41.0 16 36.67281092639057 38.0 35.0 40.0 32.0 41.0 17 36.851940917756544 38.0 35.0 40.0 32.0 41.0 18 36.669290676988865 38.0 35.0 40.0 31.0 41.0 19 36.19978791583851 38.0 34.0 40.0 30.0 41.0 20 36.58737461827748 38.0 35.0 40.0 31.0 41.0 21 36.81426121119758 38.0 35.0 40.0 32.0 41.0 22 37.18680210693446 39.0 35.0 40.0 32.0 41.0 23 37.5336698092981 39.0 35.0 40.0 33.0 41.0 24 37.55962404315855 39.0 35.0 41.0 33.0 41.0 25 36.6061405897794 38.0 35.0 40.0 31.0 41.0 26 36.88867899381711 39.0 35.0 40.0 32.0 41.0 27 37.129327878636865 39.0 35.0 40.0 32.0 41.0 28 37.16774930029611 39.0 35.0 40.0 32.0 41.0 29 37.274466457672986 39.0 35.0 41.0 33.0 41.0 30 36.919008187839346 39.0 35.0 40.0 32.0 41.0 31 37.050636542216914 39.0 35.0 40.0 32.0 41.0 32 36.916638176308 39.0 35.0 40.0 32.0 41.0 33 36.94866230522735 39.0 35.0 41.0 32.0 41.0 34 36.94297485701703 39.0 35.0 41.0 32.0 41.0 35 36.82533188853413 39.0 35.0 41.0 31.0 41.0 36 36.73324332311544 39.0 35.0 41.0 31.0 41.0 37 36.717360189600925 39.0 35.0 41.0 31.0 41.0 38 36.625126757951705 39.0 35.0 41.0 31.0 41.0 39 36.623686787620315 39.0 35.0 41.0 31.0 41.0 40 36.37660004751612 39.0 35.0 40.0 30.0 41.0 41 36.25461978409137 39.0 35.0 40.0 30.0 41.0 42 36.36421398480643 39.0 35.0 40.0 31.0 41.0 43 36.373720106853334 39.0 35.0 40.0 31.0 41.0 44 36.49557288799522 39.0 35.0 40.0 31.0 41.0 45 36.521622733567824 39.0 35.0 40.0 32.0 41.0 46 36.34986643333546 39.0 35.0 40.0 31.0 41.0 47 36.24410829040464 39.0 35.0 40.0 31.0 41.0 48 36.263897017494045 38.0 35.0 40.0 31.0 41.0 49 36.224044317477244 38.0 35.0 40.0 31.0 41.0 50 36.11194682829875 38.0 35.0 40.0 31.0 41.0 51 35.17739449392431 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 9.0 10 24.0 11 23.0 12 22.0 13 17.0 14 25.0 15 37.0 16 53.0 17 95.0 18 161.0 19 365.0 20 618.0 21 862.0 22 1165.0 23 1531.0 24 2164.0 25 2953.0 26 3514.0 27 3862.0 28 4232.0 29 4832.0 30 6426.0 31 8599.0 32 13033.0 33 21334.0 34 29077.0 35 29417.0 36 41949.0 37 66472.0 38 79255.0 39 23018.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.61590167639201 17.49636385761388 20.8340818088577 17.0536526571364 2 29.50374624072132 28.613977852850674 23.205252270053833 18.67702363637417 3 30.987176441274126 26.151251933964176 26.315819971838007 16.54575165292369 4 27.774043448279855 23.685918422928268 30.73221187555411 17.80782625323776 5 29.615582970684866 26.507622861050105 24.49687958139454 19.379914586870484 6 24.90685101377388 36.38257433086288 24.318694117851575 14.391880537511662 7 72.57073818036424 6.369478423623626 15.439842849113127 5.619940546898993 8 71.06152179077839 11.026927734929567 11.411402710736905 6.500147763555134 9 65.92340632659803 8.552322785140202 12.547153958035151 12.977116930226629 10 42.65673077480255 23.275077793165792 18.97255074664055 15.09564068539111 11 33.80395542755819 23.59697055738731 24.99724754162007 17.601826473434432 12 31.522602029286155 19.858842344978648 28.38566867354685 20.232886952188352 13 25.44430472901323 25.87281903889948 29.95428021764702 18.728596014440267 14 19.54390315982222 30.498397779490418 27.25368394824219 22.70401511244517 15 17.83013565273826 24.813267428856197 37.424452260782395 19.93214465762315 16 19.724696215514594 24.284795419909255 31.88187028098254 24.108638083593608 17 19.24374033017911 25.76416936600743 29.922409646932024 25.069680656881438 18 20.276057088884127 26.307417730467687 30.35584940865605 23.06067577199214 19 23.698376918753222 26.855591546765716 25.942354829550396 23.50367670493067 20 26.729847658671986 25.970748610732848 29.799273350987697 17.50013037960747 21 23.956818274005784 28.415221384573485 27.424336367797974 20.203623973622754 22 21.155395108157126 25.16992808840317 28.591378720889132 25.08329808255057 23 22.831497395305174 28.273542211122248 27.800698834696043 21.094261558876536 24 23.672880462181222 24.62870785117023 28.10202059418333 23.59639109246522 25 20.195511464713483 30.085529022500623 27.049422563205137 22.669536949580756 26 21.103822730091036 28.18836086757488 28.688439095339362 22.019377306994723 27 23.25016080151588 29.42580820870009 26.536596107154654 20.78743488262938 28 18.99312175137478 28.081449589449104 31.950536874250318 20.974891784925802 29 23.741257322987952 25.66131434233629 28.87589599763578 21.721532337039978 30 20.76048976375215 30.738006524775024 27.7392755529544 20.762228158518425 31 23.96608971275924 26.710435583781937 26.101417950664356 23.22205675279447 32 26.053612094591855 30.907789746947667 24.53715239347986 18.501445764980616 33 24.18802477792007 29.54257039050141 23.55669774530199 22.71270708627653 34 25.250183980112762 27.15140838949314 26.305099870779326 21.29330775961477 35 22.83323579007145 27.18269949528605 26.664657854936753 23.319406859705747 36 25.298859033568405 28.904000046357194 25.95278519814803 19.844355721926373 37 21.77252525018398 31.47218858106425 28.649325213098226 18.10596095565355 38 21.230435815567905 29.301802715372627 26.73448337804871 22.73327809101076 39 25.603947315049286 28.125488923528014 26.468219246347925 19.80234451507478 40 22.997224363023182 26.74404454926321 29.57415122875537 20.684579858958237 41 23.09660259716178 26.52268894902447 27.176615113604097 23.20409334020965 42 21.746449328689888 24.830651376518922 30.682667624715336 22.740231670075854 43 25.712307255480287 25.630023236543376 25.83689221372984 22.82077729424649 44 22.545821188714342 27.071152497783547 27.23340267596901 23.1496236375331 45 21.376460975934823 26.356092783923323 26.857329941531987 25.410116298609864 46 24.796173213654512 28.842287032154506 25.211649562793713 21.149890191397265 47 20.785696487863106 26.80228077393335 31.639943676009572 20.77207906219397 48 23.4599271033128 25.063306542738435 28.322506997038932 23.15425935690983 49 21.069054834765577 24.303917762338255 32.090767385396326 22.53626001749984 50 21.634612598726335 25.749682742955155 28.399575831677033 24.216128826641476 51 21.032838277134893 25.05461456890707 26.100259020820175 27.81228813313786 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 182.0 1 332.0 2 482.0 3 1790.5 4 3099.0 5 2207.5 6 1316.0 7 1249.5 8 1183.0 9 1174.5 10 1166.0 11 1151.5 12 1137.0 13 1050.5 14 964.0 15 1023.5 16 1083.0 17 1049.0 18 1015.0 19 918.5 20 822.0 21 1008.0 22 1194.0 23 1190.5 24 1187.0 25 1708.0 26 2593.5 27 2958.0 28 3734.0 29 4510.0 30 5222.0 31 5934.0 32 6240.5 33 6547.0 34 7392.5 35 8238.0 36 9118.5 37 9999.0 38 10743.5 39 11488.0 40 13425.5 41 15363.0 42 17797.5 43 20232.0 44 32449.0 45 44666.0 46 37967.0 47 31268.0 48 30253.0 49 29238.0 50 25738.5 51 22239.0 52 20536.0 53 18833.0 54 17254.0 55 15675.0 56 15705.5 57 15736.0 58 15186.0 59 14636.0 60 14649.0 61 14662.0 62 12829.5 63 10997.0 64 9415.0 65 7833.0 66 6609.5 67 5386.0 68 4624.5 69 3863.0 70 3214.5 71 2566.0 72 2262.0 73 1958.0 74 1718.5 75 1114.0 76 749.0 77 653.5 78 558.0 79 400.0 80 242.0 81 187.0 82 132.0 83 87.0 84 42.0 85 27.5 86 13.0 87 21.0 88 29.0 89 20.5 90 12.0 91 9.0 92 6.0 93 3.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 345146.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.958469749033743 #Duplication Level Percentage of deduplicated Percentage of total 1 73.80163883580626 21.371825256558093 2 10.48434701697866 6.0722129185909735 3 3.56982060851034 3.1012962630307177 4 1.7048694834365528 1.9748164544859277 5 1.0965592452150597 1.587733886529179 6 0.7533842259552371 1.3090112590034362 7 0.5842979919759077 1.1844263007538838 8 0.48924951725379945 1.133433387609881 9 0.4242163503386727 1.105619071349516 >10 6.640386597164554 44.79582553470126 >50 0.3851964501895967 6.634004160558141 >100 0.05502806431279953 2.852126346531613 >500 0.0040020410409308755 0.8735433700520939 >1k 0.006003061561396312 4.490273681282703 >5k 0.0010005102602327189 1.513852108962584 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG 5225 1.513852108962584 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC 4793 1.3886876857909407 No Hit GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 4545 1.3168340354516639 No Hit GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 1926 0.5580247199735764 TruSeq Adapter, Index 15 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1680 0.4867505345563906 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATAAGTGT 1341 0.3885312302619761 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT 1213 0.35144547524815584 No Hit GAACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT 833 0.241347140050877 No Hit CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 803 0.2326551662195129 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC 704 0.2039716525760113 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTA 675 0.19556941120569266 No Hit CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT 461 0.13356666454196195 TruSeq Adapter, Index 21 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC 432 0.1251644231716433 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 404 0.11705191426237013 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 356 0.10314475613218754 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13878184884078043 0.0 2 0.0 0.0 0.0 1.1085163959599706 0.0 3 0.0 0.0 0.0 1.3739113302776216 0.0 4 0.0 0.0 0.0 1.958881169128427 0.0 5 0.0 0.0 0.0 4.2045974746918695 0.0 6 0.0 0.0 0.0 4.759435137593946 0.0 7 0.0 0.0 0.0 5.602556599236265 0.0 8 0.0 0.0 0.0 6.509129469847543 0.0 9 0.0 0.0 0.0 6.796544071204649 0.0 10 0.0 0.0 0.0 8.996192915461863 0.0 11 0.0 0.0 0.0 10.025032884634328 0.0 12 0.0 0.0 0.0 12.224391996430496 0.0 13 0.0 0.0 0.0 12.650878179089428 0.0 14 0.0 0.0 0.0 12.850793577210803 0.0 15 0.0 0.0 0.0 13.318132036877147 0.0 16 0.0 0.0 0.0 13.884269265759997 0.0 17 0.0 0.0 0.0 14.49560475856594 0.0 18 0.0 0.0 0.0 15.126642058722975 0.0 19 0.0 0.0 0.0 15.941080006721792 0.0 20 0.0 0.0 0.0 16.42493321666773 0.0 21 0.0 0.0 0.0 16.93602127795194 0.0 22 0.0 0.0 0.0 17.526785766023654 0.0 23 0.0 0.0 0.0 18.062790818957776 0.0 24 0.0 0.0 0.0 18.48637967700625 0.0 25 0.0 0.0 0.0 18.869985455430456 0.0 26 0.0 0.0 0.0 19.21302868930829 0.0 27 0.0 0.0 0.0 19.576932660381402 0.0 28 0.0 0.0 0.0 19.95068753513006 0.0 29 0.0 0.0 0.0 20.306189264832852 0.0 30 0.0 0.0 0.0 20.733834377335967 0.0 31 0.0 0.0 0.0 21.134244638500807 0.0 32 0.0 0.0 0.0 21.532916504899376 0.0 33 0.0 0.0 0.0 21.91565308594044 0.0 34 0.0 0.0 0.0 22.28737983346178 0.0 35 0.0 0.0 0.0 22.706043239672486 0.0 36 0.0 0.0 0.0 23.16382052812433 0.0 37 0.0 0.0 0.0 23.580745539568763 0.0 38 0.0 0.0 0.0 23.97680981381792 0.0 39 0.0 0.0 0.0 24.34795709641717 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGCGA 25 3.8851133E-5 45.000004 41 TCGATAG 35 1.2086275E-7 45.000004 1 TAGGACG 30 2.1610704E-6 45.000004 1 TATACGG 35 1.2086275E-7 45.000004 2 ATACCTC 25 3.8851133E-5 45.000004 13 ATACCGG 30 2.1610704E-6 45.000004 2 TGCGTTG 30 2.1610704E-6 45.000004 1 CTAGATT 20 7.02642E-4 45.0 14 AAGTACG 40 6.7921064E-9 45.0 1 ACGTTGA 20 7.02642E-4 45.0 11 AATGCGT 20 7.02642E-4 45.0 39 TCGCTTG 20 7.02642E-4 45.0 1 TATTACG 20 7.02642E-4 45.0 28 TTAACGG 20 7.02642E-4 45.0 2 CGTGTGA 20 7.02642E-4 45.0 43 TTACGGT 20 7.02642E-4 45.0 30 CAATCCG 20 7.02642E-4 45.0 25 GGCCTAT 20 7.02642E-4 45.0 8 GCTTTAA 20 7.02642E-4 45.0 33 AGTACGG 65 0.0 44.999996 2 >>END_MODULE