SRR3551808_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551808_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	536660
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCG	4589	0.855103790109194	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGC	4352	0.810941750829203	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTC	4296	0.8005068385942683	No Hit
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	1732	0.32273692840904855	Illumina PCR Primer Index 5 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1608	0.2996310513174077	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCATGATTT	1188	0.2213692095553982	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCT	941	0.1753437930905974	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCATGATTTCGTA	864	0.16099578876756232	No Hit
GAACTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT	851	0.15857339842730966	Illumina PCR Primer Index 5 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTC	612	0.11403868371035665	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	550	0.10248574516453621	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACCGC	25	3.8880156E-5	45.000004	16
TACGATT	25	3.8880156E-5	45.000004	38
TTACGGC	25	3.8880156E-5	45.000004	34
ATACGAT	25	3.8880156E-5	45.000004	37
CGATCGA	25	3.8880156E-5	45.000004	41
ACAACGA	35	1.210301E-7	45.0	13
GTCGAGA	20	7.029921E-4	45.0	10
GATCGGA	20	7.029921E-4	45.0	43
TGCCACG	20	7.029921E-4	45.0	1
TTTCGCG	20	7.029921E-4	45.0	1
GCACGAT	35	1.210301E-7	45.0	40
TAGCACG	20	7.029921E-4	45.0	2
TCAGTCG	20	7.029921E-4	45.0	14
ACGATGT	30	2.1633314E-6	44.999996	21
CGTATGG	75	0.0	42.0	2
TTACACG	70	0.0	41.785713	34
CGAATGG	50	1.0786607E-9	40.500004	2
TTGACGG	95	0.0	40.26316	2
TACGGCT	595	0.0	40.084034	7
CGATGAA	470	0.0	39.734043	19