SRR3551804_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551804_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	569674
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG	7174	1.2593167320256848	No Hit
GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC	7055	1.2384275919209935	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGC	6598	1.1582062723592792	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2481	0.4355122403339454	No Hit
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	2282	0.40057998083114205	TruSeq Adapter, Index 15 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTATAGGACT	1832	0.3215874342167626	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCT	1630	0.28612855773653	No Hit
GAACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	1475	0.2589200139026882	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTATAGGACTCGTA	1331	0.2336423989860868	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTC	1069	0.1876511829572703	No Hit
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	1036	0.18185839620554914	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC	686	0.12041974883880956	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	669	0.11743558596671079	TruSeq Adapter, Index 21 (95% over 23bp)
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	576	0.1011104596664057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAG	30	2.163566E-6	45.000004	1
TTAATCG	30	2.163566E-6	45.000004	20
ACACCGC	30	2.163566E-6	45.000004	37
ACAACGA	25	3.8883198E-5	45.0	13
CGGGTTA	25	3.8883198E-5	45.0	6
AGTTTCG	20	7.030289E-4	45.0	11
CCGATAC	25	3.8883198E-5	45.0	11
TTGTCGT	20	7.030289E-4	45.0	23
CGTTCGA	20	7.030289E-4	45.0	45
TAGTTCG	20	7.030289E-4	45.0	9
CACTACG	25	3.8883198E-5	45.0	4
CTCGAAT	80	0.0	45.0	43
TATAGCG	20	7.030289E-4	45.0	1
TTACGGA	20	7.030289E-4	45.0	26
TCAACGG	40	6.8048394E-9	45.0	2
TACGGCT	700	0.0	43.392857	7
TACGAAT	85	0.0	42.35294	12
GCTACGA	85	0.0	42.35294	10
CGATGAA	490	0.0	41.785713	19
AGTACGG	55	6.002665E-11	40.909092	2