##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551800_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 407835 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.952137506589676 28.0 16.0 31.0 16.0 33.0 2 25.81440533549107 28.0 16.0 31.0 16.0 33.0 3 26.361879191339636 30.0 22.0 33.0 16.0 33.0 4 29.25375948606667 32.0 19.0 35.0 19.0 37.0 5 31.33294837372957 33.0 28.0 35.0 19.0 37.0 6 30.33799943604644 35.0 28.0 35.0 17.0 37.0 7 32.32939056235978 33.0 32.0 35.0 28.0 37.0 8 32.85398016354653 35.0 32.0 35.0 28.0 37.0 9 34.23065455392499 35.0 32.0 38.0 28.0 39.0 10 33.97828778795346 35.0 32.0 39.0 27.0 39.0 11 34.39929628403644 37.0 32.0 39.0 27.0 39.0 12 34.51058638910344 37.0 33.0 39.0 27.0 39.0 13 34.747145291600766 37.0 34.0 39.0 27.0 39.0 14 35.03663246165729 37.0 33.0 39.0 27.0 41.0 15 35.49493054789314 37.0 33.0 40.0 27.0 41.0 16 35.055343459977685 37.0 32.0 40.0 27.0 41.0 17 34.17229516838918 36.0 32.0 39.0 25.0 41.0 18 34.26947172263293 37.0 32.0 39.0 26.0 40.0 19 33.73237216030993 37.0 32.0 39.0 25.0 40.0 20 34.1714541419937 35.0 32.0 38.0 27.0 40.0 21 34.99146958941729 36.0 34.0 39.0 29.0 40.0 22 35.865828092243184 37.0 34.0 39.0 30.0 40.0 23 36.366493802640775 38.0 35.0 40.0 31.0 40.0 24 35.5524194833695 37.0 34.0 39.0 30.0 40.0 25 34.362291122635376 36.0 33.0 39.0 25.0 40.0 26 34.96296296296296 37.0 33.0 39.0 27.0 40.0 27 35.59520149079898 37.0 34.0 39.0 30.0 40.0 28 35.73560385940392 37.0 35.0 40.0 30.0 40.0 29 35.89475645788125 38.0 35.0 40.0 30.0 41.0 30 34.47810511603957 36.0 33.0 39.0 25.0 40.0 31 34.82062353647921 36.0 33.0 39.0 27.0 40.0 32 34.86601934605907 37.0 34.0 39.0 27.0 40.0 33 34.75814728995795 37.0 34.0 40.0 25.0 40.0 34 34.814932509470744 38.0 34.0 40.0 24.0 41.0 35 34.662780291049074 38.0 34.0 40.0 23.0 41.0 36 34.45158213493202 38.0 34.0 40.0 21.0 41.0 37 34.51835423639462 38.0 34.0 40.0 21.0 41.0 38 34.15716650115856 37.0 33.0 40.0 21.0 41.0 39 34.20650998565596 37.0 34.0 40.0 21.0 41.0 40 33.77583091201098 37.0 33.0 40.0 19.0 41.0 41 33.467740630402 37.0 33.0 40.0 18.0 40.0 42 34.04669290276705 37.0 34.0 40.0 20.0 40.0 43 33.95998136501281 37.0 33.0 40.0 19.0 40.0 44 34.13811222675837 38.0 34.0 40.0 20.0 40.0 45 34.12028884230142 37.0 34.0 40.0 20.0 40.0 46 33.949072541591576 37.0 33.0 40.0 20.0 40.0 47 33.939463263329536 37.0 33.0 40.0 20.0 41.0 48 33.79785207252933 37.0 33.0 40.0 20.0 40.0 49 33.8837152279721 37.0 34.0 40.0 20.0 40.0 50 33.89890519450268 37.0 33.0 40.0 20.0 40.0 51 32.593416455184084 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 5.0 10 10.0 11 17.0 12 18.0 13 24.0 14 31.0 15 53.0 16 82.0 17 186.0 18 359.0 19 631.0 20 989.0 21 1476.0 22 2199.0 23 3268.0 24 4988.0 25 7651.0 26 10213.0 27 11161.0 28 11200.0 29 12171.0 30 15030.0 31 20107.0 32 26617.0 33 34542.0 34 47404.0 35 66944.0 36 69597.0 37 47186.0 38 13167.0 39 505.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.243958953988745 12.843429328037073 17.005896992656343 26.906714725317837 2 35.2287076881582 29.588681697255016 18.862284992705384 16.3203256218814 3 24.313754336925474 28.00691456103571 32.751235180894234 14.92809592114458 4 22.38012921892432 18.133558914757195 43.623769416553266 15.862542449765224 5 28.36146971201589 20.586021307636667 32.42267093309795 18.6298380472495 6 20.369021785771206 30.636409332205428 34.11036325965158 14.884205622371793 7 58.16592494513713 4.394669412875305 32.07816886731153 5.361236774676033 8 55.284367452523696 11.665992374367084 24.582980862358554 8.466659310750671 9 49.86256696948521 5.457844471416137 25.41959370823985 19.259994850858803 10 31.95238270378952 18.466536712150745 32.45332058307894 17.12776000098079 11 25.218777201564357 18.876506430296565 36.58808096411539 19.316635404023685 12 21.0246790981647 15.097036791839837 41.986097318768614 21.892186791226845 13 20.19542216827884 17.926122083685804 46.192700479360525 15.68575526867483 14 17.641202937462456 23.553397820196896 37.658857135851505 21.146542106489143 15 13.962754545343092 19.62680986183138 48.22685644929935 18.18357914352618 16 15.934875623720377 21.456961761496686 36.22028516434342 26.387877450439518 17 16.148687581987815 21.18062451726801 39.92202729044834 22.748660610295833 18 17.406058822808244 20.172864025892824 39.55325070187698 22.867826449421948 19 16.64521191167997 23.303541873551804 35.90471636813908 24.146529846629154 20 18.076182769992766 22.191572572241224 41.8250027584685 17.90724189929751 21 18.57761104368188 26.018855664668312 36.80777765517918 18.59575563647063 22 16.071205266835854 19.361996885995563 38.01390268123138 26.55289516593721 23 16.687876224453515 25.241090146750523 37.851091740532326 20.219941888263637 24 20.502654259688356 19.6606470754104 34.65617222651317 25.180526438388075 25 16.584893400517366 27.04279917123347 33.426508269275566 22.945799158973603 26 18.664165655228217 19.390930155577625 37.099071928598576 24.845832260595586 27 20.83146370468449 22.504444199247246 33.213431902607674 23.45066019346059 28 16.664582490467957 20.713769048757463 39.97842264641338 22.6432258143612 29 24.275993968148885 19.819044466512192 33.94755231895252 21.957409246386405 30 18.733311265585346 27.025144972844412 36.13716331359496 18.104380447975284 31 21.054593156546154 19.823703213309305 37.494575011953366 21.62712861819118 32 22.68343815513627 24.502310983608567 34.872926551178786 17.94132431007638 33 16.825431853568233 24.52977306999154 32.58891463459487 26.055880441845353 34 24.572927777164786 20.03408241077887 37.41047237240551 17.982517439650838 35 21.783074037294494 24.294383758137485 31.188348229063223 22.734193975504798 36 22.36321061213481 22.450991209680385 33.47554770924516 21.710250468939645 37 19.15897360452144 23.929530324763693 38.27111454387191 18.640381526842965 38 20.217980310664853 25.644929934900144 31.943555604594998 22.19353414984001 39 22.25605943580124 20.225091029460444 37.25697892530067 20.26187060943764 40 24.50647933600598 23.21085733200927 33.511101303223114 18.771562028761632 41 19.713119276177864 23.390341682297986 32.44719065308274 24.449348388441404 42 24.00848382311474 19.97327350521657 35.42805301163461 20.590189660034085 43 23.365576765113342 20.197138548677774 30.10702857773364 26.330256108475243 44 21.485404636679046 20.109848345531894 33.82617970502777 24.578567312761287 45 20.805963195900304 18.160775803940318 33.703335907903934 27.329925092255447 46 25.710642784459402 21.635220125786166 32.06321183812081 20.590925251633628 47 17.44259320558559 19.87862738607525 41.27183787561146 21.406941532727696 48 21.032770605759683 20.935917711819734 32.81498645285471 25.21632522956588 49 19.773682984540315 17.34353353684701 39.611607635440805 23.27117584317187 50 20.43301825493153 16.98481003346942 36.22396312234114 26.35820858925791 51 20.038005565976434 16.955141172287814 32.571505633405664 30.435347628330085 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 102.0 1 364.5 2 627.0 3 9551.0 4 18475.0 5 12148.0 6 5821.0 7 5367.5 8 4914.0 9 4741.5 10 4569.0 11 4397.0 12 4225.0 13 3855.0 14 3485.0 15 3256.0 16 3027.0 17 2744.0 18 2461.0 19 2341.5 20 2222.0 21 2120.5 22 2019.0 23 1960.5 24 1902.0 25 1952.5 26 2192.0 27 2381.0 28 2655.0 29 2929.0 30 3138.0 31 3347.0 32 3755.0 33 4163.0 34 4771.5 35 5380.0 36 5876.5 37 6373.0 38 7073.5 39 7774.0 40 9872.5 41 11971.0 42 14886.5 43 17802.0 44 45838.5 45 73875.0 46 57501.0 47 41127.0 48 40108.5 49 39090.0 50 32389.5 51 25689.0 52 22508.5 53 19328.0 54 17533.0 55 15738.0 56 14588.5 57 13439.0 58 12531.0 59 11623.0 60 11548.0 61 11473.0 62 10820.0 63 10167.0 64 9173.5 65 8180.0 66 6949.5 67 5719.0 68 4938.5 69 4158.0 70 3785.5 71 3413.0 72 2951.0 73 2489.0 74 2104.0 75 1466.5 76 1214.0 77 958.5 78 703.0 79 549.5 80 396.0 81 287.5 82 179.0 83 126.5 84 74.0 85 60.5 86 47.0 87 29.0 88 11.0 89 8.5 90 6.0 91 4.5 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 407835.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.995245855104706 #Duplication Level Percentage of deduplicated Percentage of total 1 77.86393343135164 36.59234694851877 2 9.245288710701539 8.689692319216856 3 4.219685152764066 5.9491542355584714 4 2.600075687578373 4.8876478471850415 5 1.8131051492947314 4.26036611261311 6 1.2697212337333716 3.5802516928048 7 0.884442762486569 2.9095223547476996 8 0.5766805997629233 2.1680997252582253 9 0.3912780465078775 1.6549387194008516 >10 1.053146058770555 8.061654631162565 >50 0.04714898632884986 1.5166877326808073 >100 0.02595843067543406 2.417438917322814 >500 0.002648819456676945 0.8342778385117147 >1k 0.004767875022018501 5.242929573625245 >5k 5.29763891335389E-4 2.403496942104474 >10k+ 0.001589291674006167 8.831494409288586 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC 12418 3.0448588277121877 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG 12062 2.9575686245663073 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10993 2.6954528179288193 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC 9654 2.367133767332377 No Hit GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 4105 1.0065345053759487 Illumina Single End Adapter 2 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT 3969 0.9731876861966237 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCT 2456 0.6022043228266333 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTA 2418 0.5928868292324102 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTC 2201 0.539679036865399 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTATGCT 2183 0.5352654872681354 No Hit CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 1406 0.3447472629862567 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT 1306 0.3202275430014589 Illumina Single End Adapter 2 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCC 1015 0.24887515784569741 No Hit GAATGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTT 874 0.21430235266713255 No Hit TCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 663 0.16256574349920924 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATG 644 0.15790699670209765 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGATTATGCTCGT 608 0.14907989750757047 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTAT 562 0.13780082631456347 No Hit CGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG 459 0.11254551473022177 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGATTATGC 422 0.1034732183358466 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3346941777924896 0.0 2 0.0 0.0 0.0 2.049358196329398 0.0 3 0.0 0.0 0.0 2.5816813171993576 0.0 4 0.0 0.0 0.0 4.33582208491179 0.0 5 0.0 0.0 0.0 9.060036534382778 0.0 6 0.0 0.0 0.0 10.495420942292839 0.0 7 0.0 0.0 0.0 12.293942403177756 0.0 8 0.0 0.0 0.0 14.398469969472949 0.0 9 0.0 0.0 0.0 15.28461264972354 0.0 10 0.0 0.0 0.0 19.767798251743965 0.0 11 0.0 0.0 0.0 21.509679159464 0.0 12 0.0 0.0 0.0 25.60913114372234 0.0 13 0.0 0.0 0.0 26.50017776796989 0.0 14 0.0 0.0 0.0 26.948398249291994 0.0 15 0.0 0.0 0.0 28.027756323022793 0.0 16 0.0 0.0 0.0 28.925423271666237 0.0 17 0.0 0.0 0.0 29.97658366741452 0.0 18 0.0 0.0 0.0 31.13881839469393 0.0 19 0.0 0.0 0.0 32.342736645947504 0.0 20 0.0 0.0 0.0 33.09892481027867 0.0 21 0.0 0.0 0.0 33.77836625105741 0.0 22 0.0 0.0 0.0 34.49924601861047 0.0 23 0.0 0.0 0.0 35.09286843944242 0.0 24 0.0 0.0 0.0 35.54942562555936 0.0 25 0.0 0.0 0.0 35.948116272512166 0.0 26 0.0 0.0 0.0 36.38971642943837 0.0 27 0.0 0.0 0.0 36.87814925153555 0.0 28 0.0 0.0 0.0 37.27953706768669 0.0 29 0.0 0.0 0.0 37.69122316623144 0.0 30 0.0 0.0 0.0 38.15685264874275 0.0 31 0.0 0.0 0.0 38.57221670528523 0.0 32 0.0 0.0 0.0 39.02019198940748 0.0 33 0.0 0.0 0.0 39.413243100763786 0.0 34 0.0 0.0 0.0 39.80212585972268 0.0 35 0.0 0.0 0.0 40.20155209827504 0.0 36 0.0 0.0 0.0 40.55439086885628 0.0 37 2.4519719984797774E-4 0.0 0.0 40.92022509102946 0.0 38 2.4519719984797774E-4 0.0 0.0 41.307146272389566 0.0 39 2.4519719984797774E-4 0.0 0.0 41.72765947012885 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 20 7.027928E-4 45.0 2 AAAACGC 20 7.027928E-4 45.0 20 CTACGGC 20 7.027928E-4 45.0 6 AACGCTC 20 7.027928E-4 45.0 22 TTGCCCG 25 3.886364E-5 45.0 1 GTAAGTC 20 7.027928E-4 45.0 9 GTTATCA 20 7.027928E-4 45.0 38 TAGTCGG 30 2.1620453E-6 44.999996 2 CGTTTTT 5325 0.0 43.943665 1 CGGGTAT 55 6.002665E-11 40.909092 6 TACGGCT 1180 0.0 38.898304 7 CACGACC 105 0.0 38.57143 27 TCAAGCG 105 0.0 38.57143 17 GTTTTTT 6140 0.0 38.513844 2 ACAACGA 170 0.0 38.38235 13 ACACAAC 170 0.0 38.38235 11 AACGAGC 170 0.0 38.38235 15 ACGGCTG 1210 0.0 38.11983 8 TCGCAGG 30 1.1386309E-4 37.499996 2 CGTTAGG 30 1.1386309E-4 37.499996 2 >>END_MODULE