SRR3551791_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551791_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	282665
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC	12907	4.566182583623724	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG	12470	4.4115826154635345	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC	10590	3.746484354270957	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10364	3.6665310526595087	No Hit
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	3887	1.3751260325827392	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT	3008	1.0641572179081245	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT	2648	0.9367979764031629	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTC	2292	0.8108538375815896	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTA	2048	0.7245325738948932	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	968	0.34245484938000814	Illumina Single End Adapter 1 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT	835	0.29540268515734175	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	752	0.2660393044770311	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC	641	0.22677020501300124	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATG	584	0.20660499177471564	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTAT	558	0.19740682433269063	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTGAGGTT	489	0.17299630304423963	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGT	476	0.16839721932322715	No Hit
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	416	0.1471706790724002	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGGTCGTATGC	306	0.10825535527921744	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGG	25	3.8833175E-5	45.000004	2
GGGTAAC	25	3.8833175E-5	45.000004	7
GTACGGG	65	0.0	45.000004	3
TGATCCG	20	7.0242514E-4	45.0	4
CAGAATA	20	7.0242514E-4	45.0	9
CGGGTAT	20	7.0242514E-4	45.0	6
CGATTGG	35	1.2075907E-7	45.0	10
GCTTGTC	20	7.0242514E-4	45.0	38
ACGGGTA	20	7.0242514E-4	45.0	5
ATATCTC	20	7.0242514E-4	45.0	13
GTAGCAT	20	7.0242514E-4	45.0	29
CTACGGG	45	3.8198777E-10	45.0	3
GTACTAG	20	7.0242514E-4	45.0	1
GTCAAGC	45	3.8198777E-10	45.0	16
AGACACG	40	6.7830115E-9	45.0	24
ACTAAGG	20	7.0242514E-4	45.0	2
GCCAGTA	20	7.0242514E-4	45.0	25
CTCTAGG	20	7.0242514E-4	45.0	2
GGTTACG	20	7.0242514E-4	45.0	1
GACTAAG	20	7.0242514E-4	45.0	1

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content