##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551787_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 286861 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.846319297499488 28.0 25.0 31.0 16.0 33.0 2 27.56390725821914 30.0 25.0 31.0 16.0 33.0 3 27.839695880583278 30.0 26.0 31.0 16.0 33.0 4 30.340339049225932 33.0 28.0 35.0 19.0 37.0 5 31.73176904493814 33.0 30.0 35.0 26.0 35.0 6 32.391234779213626 35.0 32.0 35.0 26.0 36.0 7 33.17282237738835 35.0 32.0 35.0 29.0 37.0 8 33.407580674961046 35.0 33.0 35.0 28.0 37.0 9 34.6574577931472 37.0 33.0 39.0 28.0 39.0 10 35.42412178720704 37.0 34.0 39.0 30.0 39.0 11 35.83330951227249 37.0 35.0 39.0 31.0 39.0 12 34.84161318548008 37.0 33.0 39.0 29.0 39.0 13 35.3419007812146 37.0 34.0 39.0 30.0 39.0 14 36.65773667385947 38.0 36.0 40.0 32.0 41.0 15 36.39563760845845 38.0 35.0 40.0 30.0 41.0 16 36.664489073105095 38.0 35.0 40.0 31.0 41.0 17 35.248123655707815 37.0 32.0 40.0 27.0 41.0 18 34.953925420325525 37.0 33.0 39.0 27.0 40.0 19 34.46514862598959 37.0 32.0 38.0 27.0 40.0 20 34.53211485702135 35.0 33.0 39.0 27.0 40.0 21 35.43814600102489 36.0 34.0 39.0 30.0 40.0 22 36.01163978372801 37.0 35.0 39.0 31.0 40.0 23 35.99320228263863 37.0 35.0 40.0 31.0 40.0 24 36.029278988778536 37.0 35.0 40.0 31.0 41.0 25 35.41139088269232 36.0 34.0 39.0 30.0 40.0 26 35.39080948612743 37.0 34.0 39.0 30.0 40.0 27 35.96608810538902 37.0 35.0 40.0 31.0 41.0 28 35.84437410453146 37.0 35.0 40.0 31.0 41.0 29 35.868504258159874 37.0 35.0 40.0 31.0 41.0 30 35.532470429929475 37.0 35.0 40.0 30.0 41.0 31 34.919748589037894 37.0 34.0 40.0 26.0 41.0 32 34.636478991567344 37.0 34.0 40.0 24.0 41.0 33 33.84603344476942 37.0 33.0 40.0 18.0 41.0 34 33.04128828945029 37.0 33.0 40.0 15.0 41.0 35 32.89205573431035 37.0 33.0 40.0 12.0 41.0 36 32.20326569314058 37.0 31.0 40.0 10.0 41.0 37 32.33471960287387 37.0 31.0 40.0 10.0 41.0 38 31.886014480880984 36.0 30.0 40.0 9.0 41.0 39 31.599635363468717 36.0 30.0 40.0 9.0 40.0 40 31.29983859778778 35.0 29.0 39.0 8.0 40.0 41 30.670446662320774 35.0 26.0 39.0 8.0 40.0 42 31.24742645392716 35.0 29.0 39.0 8.0 40.0 43 31.127668104064337 35.0 28.0 39.0 8.0 40.0 44 31.1134347297123 35.0 28.0 39.0 8.0 40.0 45 31.184542339321133 36.0 28.0 39.0 8.0 40.0 46 30.887628503003196 35.0 27.0 39.0 8.0 40.0 47 30.88870916576321 35.0 27.0 39.0 8.0 40.0 48 30.868891205148138 35.0 27.0 39.0 8.0 40.0 49 30.84803092787099 35.0 27.0 39.0 8.0 40.0 50 30.834031116115472 35.0 27.0 39.0 8.0 40.0 51 27.43274965924263 31.0 20.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 0.0 10 10.0 11 3.0 12 9.0 13 11.0 14 24.0 15 32.0 16 101.0 17 220.0 18 404.0 19 690.0 20 1017.0 21 1536.0 22 2333.0 23 3506.0 24 5361.0 25 8303.0 26 11460.0 27 12240.0 28 11457.0 29 10430.0 30 10660.0 31 12302.0 32 15509.0 33 19515.0 34 25576.0 35 37785.0 36 42764.0 37 36999.0 38 15398.0 39 1203.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.68631497484844 10.340548209760128 13.104256068269999 32.86888074712142 2 38.43952297454168 35.58971069612112 14.569425610313008 11.401340719024196 3 18.865931583589266 33.14776145938277 37.5589571255765 10.427349831451469 4 18.338847037415334 13.757534136742185 55.61090563025298 12.292713195589501 5 28.337069172874667 16.332300312694997 37.700837687939455 17.629792826490878 6 15.693663481616532 32.494134790020254 41.5305670690683 10.28163465929492 7 47.66141092724351 3.984856777324209 43.26764530556611 5.086086989866172 8 41.77946810476154 15.371904859845012 34.72134587831737 8.127281157076077 9 38.491813108090675 5.337776832682031 33.081875891111025 23.088534168116265 10 27.3494828505792 15.250940350901656 40.81140343232437 16.588173366194777 11 21.63103384566044 15.846002070689288 43.8125084971467 18.710455586503567 12 19.526878871648638 11.726585349698983 49.26288341740425 19.48365236124813 13 16.003569673116946 14.979380257337176 56.24745085598949 12.76959921355639 14 15.613833877731723 23.074590132503197 41.3684676550664 19.943108334698685 15 10.779088129791084 16.3479873527597 58.94562174711794 13.927302770331277 16 11.672552211698349 20.9509135086331 40.97629165344888 26.400242626219665 17 12.338031311331969 17.63676484429741 48.577882667912334 21.447321176458285 18 12.808293912382652 19.99121525756377 47.22252240632223 19.977968423731355 19 13.072184786359944 22.02425564994893 42.0363869609323 22.867172602758828 20 13.250319841316873 21.687158589003037 50.503205385186554 14.559316184493534 21 13.900111900885795 26.1105552863582 44.262203645668116 15.727129167087892 22 11.333363545410496 17.099919473194333 43.60439376562168 27.962323215773495 23 13.02756387239813 25.14667382460495 45.56562237459955 16.260139928397376 24 18.968768846235633 16.642555105085737 39.02552107118081 25.363154977497814 25 11.90297740020428 30.402180847169884 38.68180059331871 19.01304115930712 26 13.470635604003334 16.080959070769467 45.512983640160215 24.935421685066984 27 19.202331442754506 19.896047214504588 37.46866949498189 23.43295184775902 28 12.844199804086301 16.744695165951455 48.065090758241794 22.34601427172045 29 18.618076350567 14.276252261548276 43.20803455332025 23.897636834564477 30 15.046311628279899 20.571984340848008 41.8129337902329 22.568770240639193 31 23.226928721575955 17.13164215421406 36.07740334168813 23.56402578252185 32 20.30844206776104 19.74963484056738 36.46365312817009 23.478269963501486 33 14.526199099912501 17.160576028111176 40.86264776320239 27.45057710877394 34 20.384785662742583 22.15951279539568 39.60594155357473 17.84975998828701 35 20.05988963295812 17.3634617462813 33.595713603452545 28.980935017308035 36 21.406186271399736 18.442381501842355 43.26415929666285 16.88727293009506 37 17.26585349698983 19.302728499168587 36.71778317721823 26.713634826623345 38 22.018678035703704 19.071954709772328 35.67651231781246 23.232854936711508 39 21.01610187512419 22.011357417006845 35.51929331627513 21.453247391593838 40 22.280825905229364 18.24786220504007 41.55392332872018 17.917388561010387 41 16.93503125206982 27.432798463367273 36.13561969037269 19.496550594190218 42 22.070619568362375 17.635370440736107 42.00954469237714 18.28446529852437 43 22.353683491307635 17.308731406500012 36.705582146056805 23.63200295613555 44 20.74767918957265 18.053342908237788 35.824667696201296 25.374310205988266 45 18.33466382673141 15.905264222044824 35.889507461802054 29.870564489421707 46 26.277186511934353 21.05444797306012 33.94117708576628 18.72718842923925 47 14.503888642931596 16.199831974370863 49.16736677345474 20.128912609242803 48 20.548628081196117 19.569408180268493 33.894115965572176 25.987847772963214 49 16.80395731730699 14.991232687608283 45.789772747079596 22.41503724800513 50 19.121804637089042 14.119381860901273 40.700199748310155 26.05861375369953 51 18.68709932685168 14.913146088175107 34.30546501615765 32.09428956881556 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 127.0 1 301.5 2 476.0 3 10152.0 4 19828.0 5 13325.5 6 6823.0 7 6417.5 8 6012.0 9 5832.5 10 5653.0 11 5471.5 12 5290.0 13 4984.5 14 4679.0 15 4248.0 16 3817.0 17 3502.0 18 3187.0 19 2895.0 20 2603.0 21 2343.5 22 2084.0 23 1923.0 24 1762.0 25 1748.0 26 1826.5 27 1919.0 28 1942.0 29 1965.0 30 2162.5 31 2360.0 32 2514.0 33 2668.0 34 2824.5 35 2981.0 36 3186.5 37 3392.0 38 3601.5 39 3811.0 40 4587.0 41 5363.0 42 6424.0 43 7485.0 44 9779.5 45 12074.0 46 39416.5 47 66759.0 48 46623.5 49 26488.0 50 25166.0 51 23844.0 52 18950.5 53 14057.0 54 11933.0 55 9809.0 56 8622.0 57 7435.0 58 6981.0 59 6527.0 60 6076.0 61 5625.0 62 5202.5 63 4780.0 64 4225.0 65 3670.0 66 3164.5 67 2659.0 68 2329.5 69 2000.0 70 1726.5 71 1453.0 72 1322.5 73 1192.0 74 1048.5 75 726.0 76 547.0 77 477.5 78 408.0 79 337.5 80 267.0 81 214.0 82 161.0 83 122.0 84 83.0 85 67.0 86 51.0 87 36.0 88 21.0 89 18.5 90 16.0 91 11.5 92 7.0 93 4.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 286861.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.51140489245361 #Duplication Level Percentage of deduplicated Percentage of total 1 81.70662224383682 39.637030340655244 2 8.891216579092308 8.626508149096864 3 3.688413400545518 5.367903476538459 4 1.982069635077871 3.8461193036920145 5 1.260561089237267 3.05757946958307 6 0.7431829435936663 2.163170921150272 7 0.4740714854449666 1.6098511644871392 8 0.2807513912813023 1.089571553325354 9 0.17943425926474196 0.7834147202492455 >10 0.7032399779267532 6.202844728127798 >50 0.05570918873446506 1.8387740215909714 >100 0.02315187064289457 1.9672319891233814 >500 0.005064471703133187 1.4969213976112794 >1k 0.003617479787952276 5.011615624030823 >5k 7.234959575904553E-4 3.363071707364896 >10k+ 0.0021704878727713656 13.938391433373209 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC 13647 4.757356350288119 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG 13285 4.631162827989862 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12781 4.45546797926522 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC 9582 3.3402937311101897 No Hit GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 3360 1.1712989914976242 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT 3093 1.0782225537804022 No Hit GAACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT 3050 1.0632327154963555 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC 2714 0.946102816346593 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTA 2062 0.7188150358536016 No Hit CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 825 0.287595734519506 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT 702 0.24471782500932507 Illumina Single End Adapter 1 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT 633 0.2206643635767846 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGT 542 0.18894168255705726 No Hit GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTT 525 0.1830154674215038 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCC 520 0.18127246296987043 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATG 518 0.18057526118921707 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCC 480 0.16732842735680348 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGCTAGTT 453 0.15791620331798326 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTAT 434 0.15129278640177649 No Hit TCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC 292 0.10179145997538878 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3004939674615929 0.0 2 0.0 0.0 0.0 2.173177950296485 0.0 3 0.0 0.0 0.0 2.610672067656461 0.0 4 0.0 0.0 0.0 4.439432338310192 0.0 5 0.0 0.0 0.0 11.454328054353851 0.0 6 0.0 0.0 0.0 12.590418355928481 0.0 7 0.0 0.0 0.0 14.683766702340158 0.0 8 0.0 0.0 0.0 16.975817556238038 0.0 9 0.0 0.0 0.0 17.62247220779402 0.0 10 0.0 0.0 0.0 24.10993477677342 0.0 11 0.0 0.0 0.0 25.726745706108535 0.0 12 0.0 0.0 0.0 31.078815175293958 0.0 13 0.0 0.0 0.0 31.966701642955996 0.0 14 0.0 0.0 0.0 32.392343330044866 0.0 15 0.0 0.0 0.0 33.593621998110585 0.0 16 0.0 0.0 0.0 34.54774263493469 0.0 17 0.0 0.0 0.0 35.48373602546181 0.0 18 0.0 0.0 0.0 36.577645619306914 0.0 19 0.0 0.0 0.0 37.36304342521291 0.0 20 0.0 0.0 0.0 38.00690926964627 0.0 21 0.0 0.0 0.0 38.62358424463416 0.0 22 0.0 0.0 0.0 39.2657070846159 0.0 23 0.0 0.0 0.0 39.77919619606708 0.0 24 0.0 0.0 0.0 40.20274627781399 0.0 25 0.0 0.0 0.0 40.550301365469686 0.0 26 0.0 0.0 0.0 40.909360282506164 0.0 27 0.0 0.0 0.0 41.29421566542681 0.0 28 0.0 0.0 0.0 41.62329490589519 0.0 29 0.0 0.0 0.0 41.954814352595854 0.0 30 0.0 0.0 0.0 42.367906407632965 0.0 31 3.486008903266739E-4 0.0 0.0 42.70709507392082 0.0 32 3.486008903266739E-4 0.0 0.0 43.0518613544539 0.0 33 3.486008903266739E-4 0.0 0.0 43.37780318690934 0.0 34 3.486008903266739E-4 0.0 0.0 43.682131764164524 0.0 35 3.486008903266739E-4 0.0 0.0 43.995872565458534 0.0 36 3.486008903266739E-4 0.0 0.0 44.28555990532 0.0 37 3.486008903266739E-4 0.0 0.0 44.583613666549304 0.0 38 3.486008903266739E-4 0.0 0.0 44.90084047674658 0.0 39 3.486008903266739E-4 0.0 0.0 45.23549733146019 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGGGT 20 7.024425E-4 45.000004 4 CATTGCG 20 7.024425E-4 45.000004 1 ATAGCGG 20 7.024425E-4 45.000004 2 ATCACAT 35 1.2076634E-7 45.000004 32 TATGAGG 20 7.024425E-4 45.000004 2 CGGGCTA 20 7.024425E-4 45.000004 6 AGACCGG 20 7.024425E-4 45.000004 2 GGAACAC 35 1.2076634E-7 45.000004 8 GTACTTC 20 7.024425E-4 45.000004 9 GCGATGT 20 7.024425E-4 45.000004 9 AACTATG 20 7.024425E-4 45.000004 7 ACTCATC 20 7.024425E-4 45.000004 21 CACCCGT 20 7.024425E-4 45.000004 16 TGCGTAG 20 7.024425E-4 45.000004 1 ATGTGCG 25 3.8834634E-5 45.0 1 TAGCCGT 25 3.8834634E-5 45.0 44 ATGACGG 45 3.8198777E-10 45.0 2 TATACTC 25 3.8834634E-5 45.0 18 TCGGCGT 30 2.159788E-6 44.999996 4 ATAGTTA 30 2.159788E-6 44.999996 37 >>END_MODULE