SRR3551771_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551771_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	555873
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGC	6491	1.167712768923837	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCG	6004	1.0801028292433703	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTC	5584	1.0045460024142205	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3369	0.6060736894938232	No Hit
GCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGC	3156	0.5677555844590401	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAGATCAT	1633	0.29377213860000395	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGC	1353	0.24340092071390407	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCT	1252	0.2252313028335609	No Hit
CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT	1180	0.2122787039485638	No Hit
GAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	1088	0.19572816092884526	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAGATCATCGTA	1076	0.1935693944480124	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTC	1044	0.18781268383245814	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCC	882	0.15866933634121463	No Hit
TCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGC	680	0.12233010058052829	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	611	0.10991719331573939	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	30	2.1634714E-6	45.000004	16
TTGCGTG	30	2.1634714E-6	45.000004	1
GCGAACA	25	3.8881975E-5	45.0	33
CGCATCC	20	7.0301414E-4	45.0	26
TTCGTAG	35	1.2104101E-7	45.0	1
TATTGCG	20	7.0301414E-4	45.0	1
GCCGATT	25	3.8881975E-5	45.0	9
GCCTATT	20	7.0301414E-4	45.0	43
TTACGTA	20	7.0301414E-4	45.0	21
TATAGCG	40	6.8048394E-9	45.0	1
TTACGCG	20	7.0301414E-4	45.0	1
TGTAACG	20	7.0301414E-4	45.0	1
ATCGATG	25	3.8881975E-5	45.0	1
AATCGCG	25	3.8881975E-5	45.0	1
TACGGCT	780	0.0	42.115383	7
CGTTTTT	1755	0.0	42.05128	1
CCGATGA	585	0.0	41.153847	18
CGATGAA	585	0.0	41.153847	19
TTATGCG	45	1.9252184E-8	40.0	1
ACGGCTG	820	0.0	39.786587	8