##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551768_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 351890 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.124621330529425 31.0 31.0 33.0 28.0 34.0 2 31.027042541703374 31.0 31.0 34.0 28.0 34.0 3 30.869157975503708 31.0 30.0 34.0 27.0 34.0 4 34.71396174941033 35.0 35.0 37.0 32.0 37.0 5 34.550305493193896 35.0 35.0 37.0 32.0 37.0 6 34.753880474011766 36.0 35.0 37.0 32.0 37.0 7 35.32925345988804 37.0 35.0 37.0 33.0 37.0 8 34.8174827360823 37.0 35.0 37.0 32.0 37.0 9 36.84164937906732 39.0 37.0 39.0 32.0 39.0 10 36.371073346784506 37.0 35.0 39.0 32.0 39.0 11 36.67093694052119 38.0 35.0 39.0 32.0 39.0 12 36.76608883457899 39.0 35.0 39.0 33.0 39.0 13 36.821313478643894 39.0 37.0 39.0 33.0 39.0 14 37.7535849271079 39.0 37.0 41.0 33.0 41.0 15 37.93983631248401 40.0 37.0 41.0 33.0 41.0 16 37.922927619426524 39.0 37.0 41.0 33.0 41.0 17 37.77655801528887 39.0 36.0 41.0 33.0 41.0 18 37.77946801557305 39.0 36.0 41.0 33.0 41.0 19 37.69478530222513 39.0 36.0 41.0 33.0 41.0 20 37.76437238909887 39.0 36.0 41.0 33.0 41.0 21 37.46848162778141 39.0 35.0 41.0 33.0 41.0 22 37.65636704652022 39.0 36.0 41.0 33.0 41.0 23 37.74775355935093 39.0 36.0 41.0 33.0 41.0 24 37.65636704652022 39.0 36.0 41.0 33.0 41.0 25 37.15573332575521 39.0 35.0 40.0 32.0 41.0 26 37.3610787461991 39.0 35.0 41.0 33.0 41.0 27 37.48930631731507 39.0 35.0 41.0 33.0 41.0 28 37.408283838699596 39.0 35.0 41.0 33.0 41.0 29 37.475370144079115 39.0 35.0 41.0 33.0 41.0 30 37.07088578817244 39.0 35.0 41.0 32.0 41.0 31 37.08936883685242 39.0 35.0 41.0 32.0 41.0 32 37.07427889397255 39.0 35.0 41.0 32.0 41.0 33 37.0627184631561 39.0 35.0 41.0 32.0 41.0 34 36.93190769842849 39.0 35.0 41.0 31.0 41.0 35 36.91148370229333 39.0 35.0 41.0 31.0 41.0 36 36.67782829861604 39.0 35.0 41.0 31.0 41.0 37 36.73810849981528 39.0 35.0 41.0 31.0 41.0 38 36.4584330330501 39.0 35.0 41.0 30.0 41.0 39 36.42367785387479 39.0 35.0 40.0 30.0 41.0 40 36.31098354599449 39.0 35.0 40.0 30.0 41.0 41 36.11385660291568 39.0 35.0 40.0 30.0 41.0 42 36.12504475830515 39.0 35.0 40.0 30.0 41.0 43 36.04222910568644 38.0 35.0 40.0 30.0 41.0 44 35.99460058541021 38.0 35.0 40.0 30.0 41.0 45 35.975264997584475 38.0 35.0 40.0 30.0 41.0 46 35.7831339338998 38.0 35.0 40.0 30.0 41.0 47 35.68844809457501 37.0 35.0 40.0 29.0 41.0 48 35.59601295859502 37.0 34.0 40.0 29.0 41.0 49 35.57533888431044 37.0 34.0 40.0 29.0 41.0 50 35.46513114893859 37.0 34.0 40.0 29.0 41.0 51 34.6153996987695 36.0 33.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 24.0 10 19.0 11 17.0 12 20.0 13 22.0 14 23.0 15 25.0 16 45.0 17 77.0 18 120.0 19 202.0 20 339.0 21 580.0 22 849.0 23 1225.0 24 1720.0 25 2453.0 26 3508.0 27 4016.0 28 4483.0 29 5132.0 30 6183.0 31 7786.0 32 10326.0 33 15168.0 34 25609.0 35 29492.0 36 34068.0 37 51943.0 38 75087.0 39 71313.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.595100741709054 22.464974850095203 22.373468981784082 13.566455426411665 2 32.95688993719628 25.27352297592998 24.60086958992867 17.168717496945067 3 33.57668589616073 23.68723180539373 26.82059734576146 15.915484952684078 4 30.74369831481429 24.917161613004062 26.12719884054676 18.21194123163489 5 25.83506209326778 30.629173889567763 24.329193782147833 19.206570235016624 6 25.824831623518712 34.66282076785359 24.897837392366934 14.614510216260761 7 74.94216942794624 7.750717553781011 12.289920145500014 5.017192872772742 8 75.28290090653329 8.02353008042286 10.936940521185598 5.756628491858251 9 67.61289039188382 10.572337946517377 13.97340077865242 7.841370882946375 10 40.192389667225555 24.698343232260083 20.611554747222144 14.497712353292222 11 30.85623348205405 25.445735883372645 24.92256102759385 18.775469606979453 12 28.749893432606783 22.943533490579444 28.896530165676776 19.410042911137005 13 24.801216289181276 25.740714427804146 29.978970701071354 19.479098581943223 14 20.817300861064535 28.462303560771833 28.763534058938873 21.95686151922476 15 21.878143738099975 26.379550427690475 32.342493392821616 19.399812441387933 16 23.09358038023246 28.08377618005627 28.89851942368354 19.924124016027736 17 22.16715450851118 28.430475432663616 27.286367899059368 22.116002159765834 18 21.991531444485492 28.30088948250874 29.011907130069055 20.695671942936713 19 24.430361760777515 28.002500781494216 27.095683310125324 20.471454147602945 20 25.50996049901958 27.956747847338658 28.843388558924666 17.6899030947171 21 24.28486174656853 28.818949103413 28.79564636676234 18.10054278325613 22 23.027366506578762 26.094233993577536 28.573133649720084 22.305265850123618 23 23.815965216402855 26.40256898462588 29.004518457472507 20.776947341498765 24 23.56475034812015 25.479269089772373 29.80903123135071 21.14694933075677 25 21.382534314700617 28.251726391770156 27.946517377589586 22.41922191593964 26 21.54679019011623 28.419108244053536 28.283838699593623 21.750262866236607 27 23.83358435874847 27.821478302878738 28.267924635539515 20.077012702833272 28 20.38222171701384 27.766347438119865 29.221063400494472 22.63036744437182 29 23.33996419335588 26.4054107817784 28.276450026997075 21.978174997868653 30 22.803717070675493 28.596720566085992 27.505754639233853 21.09380772400466 31 24.453948677143426 27.92605643809145 25.109267100514366 22.51072778425076 32 25.482679246355396 29.237830003694338 25.089658700161984 20.189832049788286 33 23.414419278751883 29.71098922958879 24.967177242888404 21.907414248770923 34 20.784336014095313 29.635397425331778 27.21873312682941 22.3615334337435 35 24.539202591719004 28.451220551877004 25.532694876239738 21.476881980164254 36 23.506777686208757 31.964250191821307 24.487197703827903 20.041774418142033 37 22.837534456790472 30.51635454261275 26.435533831595098 20.210577169001674 38 21.812214044161525 30.655034243655688 25.24112648839126 22.291625223791524 39 23.152405581289607 28.70414049845122 26.619398107363097 21.524055812896076 40 22.666174088493563 28.98348915854386 27.11728096848447 21.233055784478104 41 20.308619170763592 30.142658217056468 26.231208616328967 23.317513995850977 42 21.204069453522408 27.354571030719825 27.71832106624229 23.723038449515474 43 23.46301401005996 25.764301344170054 27.52053198442695 23.252152661343032 44 21.830969905368157 26.824575861774985 26.74699479951121 24.597459433345648 45 22.1108869248913 27.355139390150327 25.97402597402597 24.559947710932395 46 22.72045241410668 29.015885646082584 25.809770098610365 22.453891841200374 47 21.977038279007644 26.908977237204805 29.371110290147488 21.74287419364006 48 21.375145642104066 26.9817272443093 29.18809855352525 22.455028560061383 49 22.14783028787405 26.486686180340445 29.320526300832643 22.044957230952853 50 21.05885361902867 26.53272329421126 28.98434169768962 23.424081389070448 51 20.92642587172128 25.6682486004149 26.6566256500611 26.74869987780272 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 120.0 1 320.5 2 521.0 3 2190.0 4 3859.0 5 2612.5 6 1366.0 7 1287.0 8 1208.0 9 1192.0 10 1176.0 11 1178.0 12 1180.0 13 1154.5 14 1129.0 15 1114.5 16 1100.0 17 1130.0 18 1160.0 19 1200.5 20 1241.0 21 1701.5 22 2162.0 23 1878.5 24 1595.0 25 2182.0 26 3388.5 27 4008.0 28 4966.0 29 5924.0 30 6858.5 31 7793.0 32 8536.0 33 9279.0 34 10145.0 35 11011.0 36 10637.5 37 10264.0 38 11126.0 39 11988.0 40 13596.5 41 15205.0 42 16601.5 43 17998.0 44 20035.5 45 22073.0 46 25701.5 47 29330.0 48 30663.0 49 31996.0 50 31118.5 51 30241.0 52 26669.0 53 23097.0 54 21058.0 55 19019.0 56 18046.0 57 17073.0 58 15998.0 59 14923.0 60 14351.0 61 13779.0 62 12710.0 63 11641.0 64 10005.5 65 8370.0 66 7111.5 67 5853.0 68 4933.5 69 4014.0 70 3305.5 71 2597.0 72 2191.0 73 1785.0 74 1284.0 75 683.0 76 583.0 77 485.0 78 387.0 79 284.5 80 182.0 81 129.0 82 76.0 83 50.5 84 25.0 85 14.0 86 3.0 87 2.0 88 1.0 89 1.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 351890.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.537600184359036 #Duplication Level Percentage of deduplicated Percentage of total 1 72.122829988983 21.3033531637908 2 10.411951660663947 6.150881305831296 3 3.595113722380821 3.185730952469623 4 1.8064773430637764 2.134360220060841 5 1.1422935694995546 1.6870305374521093 6 0.8489356269642799 1.5045312678917444 7 0.7062759712009183 1.4603188080006824 8 0.602528386710297 1.4237794069100498 9 0.5636232922784885 1.4983271515722716 >10 7.998462648966307 51.354756130459336 >50 0.13766373723674816 2.726454402198596 >100 0.05386841891872754 2.9465626307128456 >500 0.007980506506478153 1.54606141233503 >1k 0.0019951266266195382 1.077852610314759 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2211 0.6283213504220069 No Hit GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC 1447 0.411208047969536 No Hit CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT 813 0.2310381084998153 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 737 0.20944045014066895 No Hit CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC 674 0.19153712807979767 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC 661 0.18784279178152263 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG 655 0.18613771349001107 No Hit CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA 609 0.17306544658842252 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCC 564 0.16027735940208587 No Hit GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC 534 0.1517519679445281 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 493 0.14010059961919918 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 490 0.1392480604734434 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 475 0.13498536474466452 No Hit TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC 471 0.13384864588365683 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 468 0.13299610673790105 No Hit GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA 403 0.11452442524652591 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.24609963340816732 0.0 2 0.0 0.0 0.0 1.1355821421466936 0.0 3 0.0 0.0 0.0 1.487680809343829 0.0 4 0.0 0.0 0.0 2.00886640711586 0.0 5 0.0 0.0 0.0 3.3774759157691325 0.0 6 0.0 0.0 0.0 4.029384182557049 0.0 7 0.0 0.0 0.0 4.7614311290460085 0.0 8 0.0 0.0 0.0 5.839608968711813 0.0 9 0.0 0.0 0.0 6.232345335189974 0.0 10 0.0 0.0 0.0 7.255108130381653 0.0 11 0.0 0.0 0.0 8.538179544744096 0.0 12 0.0 0.0 0.0 9.65614254454517 0.0 13 0.0 0.0 0.0 10.06933985052147 0.0 14 0.0 0.0 0.0 10.265139674330046 0.0 15 0.0 0.0 0.0 10.615249083520418 0.0 16 0.0 0.0 0.0 11.302679814714825 0.0 17 0.0 0.0 0.0 12.052345903549405 0.0 18 0.0 0.0 0.0 12.871351842905453 0.0 19 0.0 0.0 0.0 13.429196623944982 0.0 20 0.0 0.0 0.0 13.951803120293274 0.0 21 0.0 0.0 0.0 14.561368609508653 0.0 22 0.0 0.0 0.0 15.178606951035835 0.0 23 0.0 0.0 0.0 15.773679274773366 0.0 24 0.0 0.0 0.0 16.258774048708403 0.0 25 0.0 0.0 0.0 16.722839523714796 0.0 26 0.0 0.0 0.0 17.148824916877434 0.0 27 0.0 0.0 0.0 17.560885503992726 0.0 28 0.0 0.0 0.0 17.996248827758674 0.0 29 0.0 0.0 0.0 18.405183438006194 0.0 30 0.0 0.0 0.0 18.870101452158345 0.0 31 0.0 0.0 0.0 19.30887493250732 0.0 32 0.0 0.0 0.0 19.745943334564778 0.0 33 0.0 0.0 0.0 20.151751967944527 0.0 34 0.0 0.0 0.0 20.563528375344568 0.0 35 0.0 0.0 0.0 21.005712012276565 0.0 36 0.0 0.0 0.0 21.447895649208558 0.0 37 0.0 0.0 0.0 21.853135923157804 0.0 38 0.0 0.0 0.0 22.258944556537553 0.0 39 0.0 0.0 0.0 22.728977805564238 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGAC 20 7.026607E-4 45.0 11 TCACACG 20 7.026607E-4 45.0 39 TCGGGCA 20 7.026607E-4 45.0 27 AAGGTAC 20 7.026607E-4 45.0 27 TCGATCA 20 7.026607E-4 45.0 17 ACGGGTC 20 7.026607E-4 45.0 5 AGTATAT 20 7.026607E-4 45.0 39 TGTTGCG 20 7.026607E-4 45.0 1 TACGCCC 20 7.026607E-4 45.0 28 CTTGCGT 35 1.2087185E-7 45.0 15 CGGGCCC 20 7.026607E-4 45.0 6 ACGTCGG 20 7.026607E-4 45.0 43 GCGTGCA 20 7.026607E-4 45.0 18 GCTACGA 55 1.8189894E-12 45.0 10 ATCGGTA 20 7.026607E-4 45.0 33 CGATAGA 20 7.026607E-4 45.0 10 AATACGC 20 7.026607E-4 45.0 26 CGCCCCC 20 7.026607E-4 45.0 27 CTATCGG 30 2.161194E-6 44.999996 2 GTTAGCG 25 3.885271E-5 44.999996 1 >>END_MODULE