SRR3551764_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551764_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	336559
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC	1230	0.3654634105758574	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG	1190	0.3535784216140409	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1166	0.346447428236951	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC	1094	0.3250544481056813	No Hit
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	995	0.2956391004251855	No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	727	0.21600967438101493	No Hit
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT	530	0.15747610374406865	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC	465	0.13816299668111684	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGT	20	7.0261705E-4	45.0	17
ATTAGTC	40	6.7902874E-9	45.0	31
GACCGTT	20	7.0261705E-4	45.0	9
TTCCGAA	20	7.0261705E-4	45.0	45
TACGAAT	25	3.8849077E-5	45.0	12
CGAATAT	25	3.8849077E-5	45.0	14
ATCGAGT	20	7.0261705E-4	45.0	23
CGAGGGT	30	2.1609121E-6	44.999996	4
ACGGGTA	80	0.0	42.1875	5
CATGCGG	45	1.9213985E-8	40.0	2
ACGGGAC	85	0.0	39.705883	5
CGTTTTT	680	0.0	39.705883	1
ACGGGTC	40	3.448513E-7	39.375	5
CACGGGT	35	6.23513E-6	38.571426	4
GCGCGAC	35	6.23513E-6	38.571426	9
TCGTCCC	35	6.23513E-6	38.571426	38
TACGGGA	95	0.0	37.894737	4
TACGGCT	190	0.0	37.894737	7
AACCCCG	30	1.1382075E-4	37.499996	19
CTACGAA	30	1.1382075E-4	37.499996	11