##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551764_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 336559 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33271135224433 31.0 31.0 33.0 28.0 34.0 2 31.29180916273224 31.0 31.0 34.0 28.0 34.0 3 31.11988388365784 31.0 31.0 34.0 28.0 34.0 4 34.94484473747545 35.0 35.0 37.0 32.0 37.0 5 34.519917755876385 35.0 35.0 37.0 32.0 37.0 6 34.8069877792601 37.0 35.0 37.0 32.0 37.0 7 35.46565386752397 37.0 35.0 37.0 33.0 37.0 8 35.121384363514274 37.0 35.0 37.0 32.0 37.0 9 37.0764293927662 39.0 37.0 39.0 33.0 39.0 10 36.51064746448617 38.0 35.0 39.0 32.0 39.0 11 36.736762350731965 39.0 37.0 39.0 33.0 39.0 12 36.82083676264786 39.0 35.0 39.0 33.0 39.0 13 36.880026978924946 39.0 37.0 39.0 33.0 39.0 14 37.83826609896036 40.0 37.0 41.0 33.0 41.0 15 37.994075333002534 40.0 37.0 41.0 33.0 41.0 16 38.0233124058486 40.0 37.0 41.0 33.0 41.0 17 37.880820301938144 40.0 37.0 41.0 33.0 41.0 18 37.8572701963103 39.0 37.0 41.0 33.0 41.0 19 37.77348993787122 39.0 36.0 41.0 33.0 41.0 20 37.84954495348512 39.0 36.0 41.0 33.0 41.0 21 37.63285783473329 39.0 36.0 41.0 33.0 41.0 22 37.801975285165454 39.0 36.0 41.0 33.0 41.0 23 37.861655757237216 40.0 36.0 41.0 33.0 41.0 24 37.79612192810176 40.0 36.0 41.0 33.0 41.0 25 37.334048413502536 39.0 35.0 41.0 32.0 41.0 26 37.51979593473953 39.0 35.0 41.0 33.0 41.0 27 37.621219459292426 39.0 36.0 41.0 33.0 41.0 28 37.52901868617389 39.0 35.0 41.0 33.0 41.0 29 37.59704836299133 40.0 36.0 41.0 33.0 41.0 30 37.25542624027288 39.0 35.0 41.0 32.0 41.0 31 37.260055443473505 39.0 35.0 41.0 33.0 41.0 32 37.29396925947605 39.0 35.0 41.0 33.0 41.0 33 37.320579749761556 39.0 35.0 41.0 33.0 41.0 34 37.190320270740045 39.0 35.0 41.0 32.0 41.0 35 37.17161329811415 40.0 35.0 41.0 32.0 41.0 36 37.00741326186493 39.0 35.0 41.0 32.0 41.0 37 37.030333463077795 39.0 35.0 41.0 32.0 41.0 38 36.84300523830888 39.0 35.0 41.0 31.0 41.0 39 36.84815440977659 39.0 35.0 41.0 31.0 41.0 40 36.751199641073335 39.0 35.0 41.0 31.0 41.0 41 36.5858081346807 39.0 35.0 41.0 31.0 41.0 42 36.68806360846092 39.0 35.0 41.0 31.0 41.0 43 36.650177234897896 39.0 35.0 41.0 31.0 41.0 44 36.678710122147976 39.0 35.0 41.0 31.0 41.0 45 36.68458724918959 39.0 35.0 41.0 31.0 41.0 46 36.52425874809469 39.0 35.0 41.0 31.0 41.0 47 36.43526989324309 39.0 35.0 41.0 31.0 41.0 48 36.39229971565164 39.0 35.0 40.0 31.0 41.0 49 36.391152814216824 39.0 35.0 40.0 31.0 41.0 50 36.33931346361262 38.0 35.0 40.0 31.0 41.0 51 35.42043148452426 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 17.0 9 20.0 10 26.0 11 18.0 12 18.0 13 19.0 14 21.0 15 38.0 16 41.0 17 64.0 18 109.0 19 189.0 20 309.0 21 550.0 22 742.0 23 1156.0 24 1507.0 25 2052.0 26 2694.0 27 3127.0 28 3482.0 29 4030.0 30 4925.0 31 6431.0 32 9039.0 33 13300.0 34 24371.0 35 26222.0 36 28510.0 37 44628.0 38 77066.0 39 81824.0 40 12.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.93321230452907 22.81293918748273 21.831239099236686 13.422609408751512 2 33.1294067310635 25.32661435290692 24.164559557165312 17.379419358864272 3 32.663515163760295 24.681259452280283 26.064672167435727 16.590553216523702 4 28.773558276557747 25.638298188430557 26.617027029436148 18.971116505575544 5 26.700816201616952 29.88450761976355 23.645779788982022 19.768896389637476 6 26.95872046208837 33.46515766923481 24.43553730549473 15.140584563182086 7 77.11099688316165 6.848724889246759 11.230423194744459 4.809855032847139 8 77.62086290962358 7.187744199382575 9.821457753321111 5.369935137672741 9 70.92040325767547 8.739032383623673 11.889742957401229 8.450821401299624 10 42.48734991487377 23.14839300093 19.586461809073594 14.777795275122637 11 32.026479755406925 25.14447689706708 24.23111549535148 18.597927852174507 12 29.639379722426085 22.004462813355165 28.394427128675805 19.961730335542953 13 26.909100633172788 22.732121262542375 29.500028226848784 20.85874987743605 14 21.555210230598497 26.751030279980625 28.898350660656824 22.79540882876405 15 20.476647482313652 25.369697437893507 32.962422636149974 21.191232443642868 16 23.39322377354342 24.91806785734448 30.671591013759848 21.017117355352255 17 23.116897780181187 25.72357298423159 28.76375316066425 22.39577607492297 18 23.38044741040947 26.012081091279686 28.790197261104293 21.81727423720655 19 24.365712995344055 27.3940081828149 26.86393767511788 21.37634114672316 20 26.819963215959163 26.459848050416124 28.202187432218423 18.518001301406294 21 25.005125401489785 27.21543622366361 27.93655792892182 19.842880445924784 22 23.967862989847248 24.704732305479872 28.318957448768266 23.00844725590461 23 23.908140920314118 25.91878392792943 29.080190991772614 21.092884159983836 24 24.652735478771923 24.698789810998964 28.799111002825654 21.84936370740346 25 22.091817482224513 27.432337272216756 27.652209568010367 22.823635677548364 26 22.225820732768995 28.299644341705317 27.627548215914594 21.846986709611095 27 22.98527152742907 28.474056554719972 27.11292819386794 21.427743723983017 28 20.080877349885164 28.723344198194077 29.070980125327207 22.124798326593552 29 22.185708895022863 27.714308635335854 28.403043745673124 21.69693872396816 30 23.14334188062123 28.12463787924257 27.574660015034514 21.15736022510169 31 23.196230081501312 28.49990640571193 25.45348661007431 22.85037690271245 32 25.159036008545304 28.106810395799847 26.538883227012207 20.195270368642646 33 25.41396902177627 27.1028259532504 25.90511619062334 21.578088834349995 34 23.0966932989461 26.54482572149311 27.631707962051234 22.72677301750956 35 23.81365525806768 26.742116538259264 27.183049628742655 22.261178574930398 36 24.016591444590695 30.515006284187912 24.71780579333787 20.75059647788352 37 22.682204308902747 29.312542525976127 27.808200048134207 20.19705311698692 38 23.69955936403424 28.318066074596132 25.77497556149145 22.207398999878176 39 25.52241954605285 24.941540710544068 26.773314634284034 22.762725109119057 40 25.75982220056513 24.385026102407007 27.625468342846276 22.229683354181585 41 22.461440638937006 26.907912134276607 26.64971074908114 23.980936477705246 42 23.832671240406587 26.46638479434512 26.759944021701994 22.940999943546302 43 23.95746362450566 26.675857724797137 27.02468215082645 22.34199649987075 44 23.16057511461586 26.66159573804296 26.477378409134804 23.700450738206378 45 23.752150440190277 24.971847432396697 26.281573215988875 24.994428911424148 46 23.485926687445588 27.08024447422294 26.293755329674738 23.140073508656727 47 21.826187978927912 27.014282785484863 28.959855478534223 22.199673757053 48 23.02092649431452 25.396141538333545 28.326979816317493 23.25595215103444 49 22.953182057232162 24.53953095891062 29.486360489542697 23.02092649431452 50 22.167584286856094 24.757620506359952 28.845462459776737 24.229332747007213 51 21.12378513128456 24.59152778561857 27.062714115504267 27.221972967592606 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 120.0 1 318.0 2 516.0 3 1412.0 4 2308.0 5 1595.0 6 882.0 7 891.0 8 900.0 9 894.0 10 888.0 11 867.0 12 846.0 13 813.0 14 780.0 15 831.0 16 882.0 17 858.0 18 834.0 19 848.5 20 863.0 21 1217.0 22 1571.0 23 1515.0 24 1459.0 25 1768.0 26 2536.5 27 2996.0 28 3493.5 29 3991.0 30 4818.0 31 5645.0 32 6303.5 33 6962.0 34 8062.0 35 9162.0 36 9782.0 37 10402.0 38 11467.5 39 12533.0 40 13488.5 41 14444.0 42 15575.5 43 16707.0 44 19095.5 45 21484.0 46 24903.5 47 28323.0 48 28717.5 49 29112.0 50 28886.5 51 28661.0 52 25960.5 53 23260.0 54 21496.5 55 19733.0 56 18573.0 57 17413.0 58 17246.5 59 17080.0 60 16197.0 61 15314.0 62 14044.0 63 12774.0 64 10882.5 65 8991.0 66 7211.0 67 5431.0 68 4837.5 69 4244.0 70 3565.0 71 2886.0 72 2329.5 73 1773.0 74 1412.0 75 835.0 76 619.0 77 486.0 78 353.0 79 277.5 80 202.0 81 131.5 82 61.0 83 40.5 84 20.0 85 10.5 86 1.0 87 1.5 88 2.0 89 2.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 336559.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.097354715981606 #Duplication Level Percentage of deduplicated Percentage of total 1 70.03710662964463 21.779687481430862 2 9.634882556282506 5.992387209990815 3 3.4082509344102765 3.179627648052964 4 1.9479025551635911 2.4229846684035654 5 1.480906951386915 2.3026144384320917 6 1.2603768874310524 2.3516632286560957 7 1.074890129083973 2.339836773738209 8 0.956230456809344 2.378899016450024 9 0.9113599398739455 2.550679499177618 >10 9.182399148656069 49.565223066278485 >50 0.07278913416805322 1.5376633004045508 >100 0.02592489710095046 1.4492918463583122 >500 0.002991334280878899 0.6982895246039621 >1k 0.003988445707838533 1.4511522980224436 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC 1230 0.3654634105758574 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG 1190 0.3535784216140409 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1166 0.346447428236951 No Hit GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC 1094 0.3250544481056813 No Hit GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC 995 0.2956391004251855 No Hit CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC 727 0.21600967438101493 No Hit CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT 530 0.15747610374406865 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC 465 0.13816299668111684 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17381796356656634 0.0 2 0.0 0.0 0.0 0.8961281677209643 0.0 3 0.0 0.0 0.0 1.1786937802881516 0.0 4 0.0 0.0 0.0 1.6439910981432675 0.0 5 0.0 0.0 0.0 2.989668973344941 0.0 6 0.0 0.0 0.0 3.5714391830258587 0.0 7 0.0 0.0 0.0 4.215902709480359 0.0 8 0.0 0.0 0.0 5.064788046078102 0.0 9 0.0 0.0 0.0 5.3827115008066935 0.0 10 0.0 0.0 0.0 6.45681737823086 0.0 11 0.0 0.0 0.0 7.65957826116669 0.0 12 0.0 0.0 0.0 8.920278465291375 0.0 13 0.0 0.0 0.0 9.333578956438544 0.0 14 0.0 0.0 0.0 9.521361782035244 0.0 15 0.0 0.0 0.0 9.886528067887056 0.0 16 0.0 0.0 0.0 10.473646522600792 0.0 17 0.0 0.0 0.0 11.139503029186562 0.0 18 0.0 0.0 0.0 11.839231754313507 0.0 19 0.0 0.0 0.0 12.374947631767387 0.0 20 0.0 0.0 0.0 12.822714590903823 0.0 21 0.0 0.0 0.0 13.372098205663791 0.0 22 0.0 0.0 0.0 13.941983426382892 0.0 23 0.0 0.0 0.0 14.467002813771137 0.0 24 0.0 0.0 0.0 14.883571676882806 0.0 25 0.0 0.0 0.0 15.281124557655566 0.0 26 0.0 0.0 0.0 15.64629084350738 0.0 27 0.0 0.0 0.0 15.985904403091286 0.0 28 0.0 0.0 0.0 16.359093056492323 0.0 29 0.0 0.0 0.0 16.751297692232267 0.0 30 0.0 0.0 0.0 17.156575815830212 0.0 31 0.0 0.0 0.0 17.53748971205643 0.0 32 0.0 0.0 0.0 17.938013840069647 0.0 33 0.0 0.0 0.0 18.30288300119741 0.0 34 0.0 0.0 0.0 18.653490175571 0.0 35 0.0 0.0 0.0 19.041237940450262 0.0 36 0.0 0.0 0.0 19.41977483888412 0.0 37 0.0 0.0 0.0 19.792369242837065 0.0 38 0.0 0.0 0.0 20.18338537968083 0.0 39 0.0 0.0 0.0 20.595794496655863 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCGT 20 7.0261705E-4 45.0 17 ATTAGTC 40 6.7902874E-9 45.0 31 GACCGTT 20 7.0261705E-4 45.0 9 TTCCGAA 20 7.0261705E-4 45.0 45 TACGAAT 25 3.8849077E-5 45.0 12 CGAATAT 25 3.8849077E-5 45.0 14 ATCGAGT 20 7.0261705E-4 45.0 23 CGAGGGT 30 2.1609121E-6 44.999996 4 ACGGGTA 80 0.0 42.1875 5 CATGCGG 45 1.9213985E-8 40.0 2 ACGGGAC 85 0.0 39.705883 5 CGTTTTT 680 0.0 39.705883 1 ACGGGTC 40 3.448513E-7 39.375 5 CACGGGT 35 6.23513E-6 38.571426 4 GCGCGAC 35 6.23513E-6 38.571426 9 TCGTCCC 35 6.23513E-6 38.571426 38 TACGGGA 95 0.0 37.894737 4 TACGGCT 190 0.0 37.894737 7 AACCCCG 30 1.1382075E-4 37.499996 19 CTACGAA 30 1.1382075E-4 37.499996 11 >>END_MODULE