##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551763_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 350232 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.304406793211356 31.0 31.0 33.0 28.0 34.0 2 31.227620548664884 31.0 31.0 34.0 28.0 34.0 3 31.064474405536902 31.0 31.0 34.0 27.0 34.0 4 34.88390267023002 35.0 35.0 37.0 32.0 37.0 5 34.53351778249846 35.0 35.0 37.0 32.0 37.0 6 34.82008211699674 36.0 35.0 37.0 32.0 37.0 7 35.48200050252404 37.0 35.0 37.0 33.0 37.0 8 35.13982731446584 37.0 35.0 37.0 32.0 37.0 9 37.16589289385322 39.0 37.0 39.0 34.0 39.0 10 36.59216176705726 38.0 35.0 39.0 32.0 39.0 11 36.81633031818909 39.0 37.0 39.0 33.0 39.0 12 36.919984467438724 39.0 37.0 39.0 33.0 39.0 13 37.01893316430252 39.0 37.0 39.0 33.0 39.0 14 37.984707279746 40.0 37.0 41.0 33.0 41.0 15 38.18007206651591 40.0 37.0 41.0 34.0 41.0 16 38.14817035564997 40.0 37.0 41.0 34.0 41.0 17 38.029509011169736 40.0 37.0 41.0 33.0 41.0 18 38.00773201763403 39.0 37.0 41.0 34.0 41.0 19 37.94339180885813 39.0 37.0 41.0 34.0 41.0 20 38.034736974348434 40.0 37.0 41.0 34.0 41.0 21 37.75629011626579 39.0 36.0 41.0 33.0 41.0 22 37.92520386486672 40.0 36.0 41.0 33.0 41.0 23 38.05200267251422 40.0 37.0 41.0 34.0 41.0 24 37.94917654583248 40.0 36.0 41.0 34.0 41.0 25 37.473548961831014 39.0 35.0 41.0 33.0 41.0 26 37.67968375248407 39.0 36.0 41.0 33.0 41.0 27 37.824619109618766 40.0 36.0 41.0 34.0 41.0 28 37.74375271248772 40.0 36.0 41.0 33.0 41.0 29 37.78961945224879 40.0 36.0 41.0 33.0 41.0 30 37.4293182804541 39.0 36.0 41.0 33.0 41.0 31 37.46749868658489 39.0 36.0 41.0 33.0 41.0 32 37.50487962265013 39.0 36.0 41.0 33.0 41.0 33 37.54596381826903 40.0 36.0 41.0 33.0 41.0 34 37.415498869320906 40.0 36.0 41.0 33.0 41.0 35 37.38363142145778 40.0 36.0 41.0 33.0 41.0 36 37.202899792137785 40.0 35.0 41.0 33.0 41.0 37 37.295033006692705 40.0 36.0 41.0 33.0 41.0 38 37.0556488270632 39.0 35.0 41.0 32.0 41.0 39 37.08674535736312 39.0 35.0 41.0 32.0 41.0 40 37.012269010256055 39.0 35.0 41.0 32.0 41.0 41 36.869280933781035 39.0 35.0 41.0 31.0 41.0 42 36.990146531442015 39.0 35.0 41.0 32.0 41.0 43 36.98499280476941 39.0 35.0 41.0 32.0 41.0 44 36.9820804495306 39.0 35.0 41.0 32.0 41.0 45 37.021225930240526 39.0 35.0 41.0 32.0 41.0 46 36.868444345462436 39.0 35.0 41.0 32.0 41.0 47 36.80040087713287 39.0 35.0 41.0 32.0 41.0 48 36.74480915507435 39.0 35.0 41.0 32.0 41.0 49 36.78389182027913 39.0 35.0 41.0 32.0 41.0 50 36.741879668334136 39.0 35.0 41.0 32.0 41.0 51 35.85219797163023 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 12.0 9 20.0 10 19.0 11 21.0 12 21.0 13 15.0 14 18.0 15 28.0 16 42.0 17 66.0 18 98.0 19 158.0 20 254.0 21 407.0 22 575.0 23 904.0 24 1329.0 25 1990.0 26 2781.0 27 3187.0 28 3437.0 29 3945.0 30 4819.0 31 6101.0 32 8370.0 33 12658.0 34 22836.0 35 25940.0 36 29375.0 37 46463.0 38 83097.0 39 91235.0 40 11.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.89821603965372 22.963064482971287 25.373752255647688 12.76496722172731 2 33.22569039950661 23.751399072614724 26.000194157015923 17.022716370862742 3 33.36274241074488 22.689531510541585 27.867813335160697 16.079912743552846 4 29.754848214897557 25.869709221316157 25.499954315996256 18.875488247790038 5 25.450272961922384 31.080826423627766 24.966022522213844 18.502878092236003 6 26.279437629913886 33.664827885515884 24.57057036478677 15.485164119783457 7 77.9292012151945 7.104719157586971 10.056191324607688 4.909888302610841 8 79.08700518513443 6.087107974142854 9.736117773361658 5.089769067361064 9 71.57227209392632 9.8354804815094 12.128246419516206 6.4640010050480825 10 39.01471024920624 29.482171817538088 18.331848603211586 13.171269330044085 11 29.215776970693714 25.97678110509605 26.702014664565205 18.105427259645033 12 26.87018890335549 23.829918454053313 30.152299047488523 19.147593595102673 13 24.49547728362914 25.52193974279906 30.723063569291213 19.259519404280592 14 20.236586034400055 27.105175997624432 30.510061901825075 22.148176066150437 15 20.35336576897599 27.50548208044953 32.366260079033324 19.77489207154115 16 22.874266200689828 27.418396948308548 30.161435848237737 19.545901002763884 17 23.014458987185638 27.6054158386441 27.789293953722105 21.59083122044816 18 21.965154526142673 27.655953767788212 30.06721259051143 20.311679115557688 19 23.765389798761962 27.896936887548822 27.963464218004063 20.374209095685146 20 24.213664085520456 28.716679229767696 28.42887000616734 18.640786678544508 21 24.079752849539734 28.187030311336486 28.947383448685443 18.785833390438338 22 22.88568720162635 25.842013294045092 29.484456017725392 21.78784348660317 23 22.635281756093104 25.31122227552023 30.440679321135704 21.612816647250966 24 21.86122341762032 26.283434980241672 30.6331231869161 21.22221841522191 25 20.93498024166838 28.6884122524498 28.214155188560724 22.16245231732109 26 20.02958039242559 29.342550081089108 28.65729002489778 21.97057950158752 27 22.193003494826286 27.752175700678407 29.820804495305968 20.234016309189336 28 19.23696292743096 28.49054341122456 30.66281778935106 21.60967587199342 29 20.050138194111334 27.855821284177345 29.44105621416661 22.652984307544713 30 21.79498161218849 27.79928732954156 29.57011352474931 20.835617533520637 31 22.176443043468332 27.3844194705224 29.08300783480664 21.356129651202632 32 22.009410904771695 27.504911030402706 27.966033943214786 22.519644121610817 33 22.081648735695197 27.20054135544439 28.19702368715594 22.52078622170447 34 20.218597957925034 27.142579775691544 30.14458987185637 22.494232394527057 35 21.388393978848306 25.945658877544027 28.762077708490374 23.903869435117294 36 21.507172388588135 28.716393704744288 28.267262842915553 21.509171063752028 37 20.214029557550422 27.83669110760867 30.624557436213713 21.324721898627196 38 20.409328673564954 27.804141254939584 27.842401608076933 23.944128463418537 39 23.293416935060186 25.501096416089908 28.15476598369081 23.050720665159094 40 22.53392037278147 26.12354096713036 29.17094954201786 22.171589118070308 41 19.96105438680646 26.430480367299392 28.288106169624704 25.320359076269444 42 19.65811233696521 26.238893076589232 29.034754105849835 25.068240480595723 43 20.994083921514882 25.37774960597547 28.7123963544165 24.91577011809315 44 20.77879805386144 26.217764224856666 28.193026336828158 24.810411384453733 45 22.142465565682176 25.55191987025743 27.777872952785582 24.527741611274813 46 21.903766646108867 26.901311130907512 28.257840517142924 22.9370817058407 47 20.94440256744101 24.688777724479774 30.853262979967568 23.513556728111652 48 19.920509833481805 25.023984101966697 30.509205326754834 24.54630073779666 49 21.047191575869707 24.790139107791408 31.4271682770278 22.735501039311085 50 20.564083236254827 23.893019484227597 30.68366111606021 24.859236163457364 51 20.385915621645083 24.052056922268665 28.595045569793736 26.966981886292512 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 131.0 1 305.5 2 480.0 3 1659.5 4 2839.0 5 1982.0 6 1125.0 7 1086.0 8 1047.0 9 1025.5 10 1004.0 11 995.0 12 986.0 13 914.5 14 843.0 15 866.0 16 889.0 17 918.5 18 948.0 19 1053.0 20 1158.0 21 1410.0 22 1662.0 23 1680.5 24 1699.0 25 2379.0 26 3820.0 27 4581.0 28 5359.0 29 6137.0 30 6808.5 31 7480.0 32 8171.5 33 8863.0 34 9784.5 35 10706.0 36 11685.5 37 12665.0 38 13404.5 39 14144.0 40 15655.0 41 17166.0 42 19052.5 43 20939.0 44 22506.0 45 24073.0 46 27199.0 47 30325.0 48 31882.5 49 33440.0 50 32095.0 51 30750.0 52 26486.0 53 22222.0 54 20251.0 55 18280.0 56 16908.0 57 15536.0 58 14609.5 59 13683.0 60 12750.5 61 11818.0 62 10330.5 63 8843.0 64 7747.0 65 6651.0 66 5807.0 67 4963.0 68 4141.0 69 3319.0 70 2906.0 71 2493.0 72 2032.5 73 1572.0 74 1158.5 75 618.5 76 492.0 77 392.0 78 292.0 79 199.0 80 106.0 81 79.5 82 53.0 83 33.0 84 13.0 85 10.0 86 7.0 87 4.5 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 350232.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.147689513966004 #Duplication Level Percentage of deduplicated Percentage of total 1 69.4180993896637 20.92795307049214 2 10.770460309767188 6.494089866827106 3 3.816224818903829 3.4515108286741127 4 1.9681764418301642 2.373438891079926 5 1.380336841282431 2.080698325783565 6 1.0464745224564604 1.8929273392375927 7 0.9080341692465923 1.9162592541762824 8 0.88711812607536 2.1395649461705037 9 0.695953504562985 1.8883251154549252 >10 8.963758253382203 51.151048785959865 >50 0.09856848397316065 2.071423713310953 >100 0.04281257384692836 2.3835930600495985 >500 0.001991282504508296 0.43553627126709066 >1k 0.001991282504508296 0.7936305315163251 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1566 0.44713218666483934 No Hit GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 1078 0.30779597523927 TruSeq Adapter, Index 22 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 738 0.2107174672788323 TruSeq Adapter, Index 22 (95% over 23bp) CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT 713 0.203579341693506 TruSeq Adapter, Index 20 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 477 0.13619543616802576 TruSeq Adapter, Index 22 (95% over 23bp) AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 434 0.12391786016126453 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 407 0.11620868452911212 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCC 392 0.11192580917791636 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 388 0.11078370908426416 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 379 0.10821398387354667 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20928984216176705 0.0 2 0.0 0.0 0.0 0.9653601041595286 0.0 3 0.0 0.0 0.0 1.2782955298202334 0.0 4 0.0 0.0 0.0 1.7508394435688344 0.0 5 0.0 0.0 0.0 3.0516914502386987 0.0 6 0.0 0.0 0.0 3.724959455446675 0.0 7 0.0 0.0 0.0 4.4219260375979355 0.0 8 0.0 0.0 0.0 5.44125037118253 0.0 9 0.0 0.0 0.0 5.802154000776628 0.0 10 0.0 0.0 0.0 6.64902122021974 0.0 11 0.0 0.0 0.0 7.962721852943192 0.0 12 0.0 0.0 0.0 8.945784508554329 0.0 13 0.0 0.0 0.0 9.340094565887755 0.0 14 0.0 0.0 0.0 9.509125379748282 0.0 15 0.0 0.0 0.0 9.838050206720117 0.0 16 0.0 0.0 0.0 10.507320861600311 0.0 17 0.0 0.0 0.0 11.285947600447702 0.0 18 0.0 0.0 0.0 12.158226546974577 0.0 19 0.0 0.0 0.0 12.704721441787159 0.0 20 0.0 0.0 0.0 13.246933461248544 0.0 21 0.0 0.0 0.0 13.891648964115214 0.0 22 0.0 0.0 0.0 14.52265926585806 0.0 23 0.0 0.0 0.0 15.131969665821513 0.0 24 0.0 0.0 0.0 15.660190959135658 0.0 25 0.0 0.0 0.0 16.132163822837434 0.0 26 0.0 0.0 0.0 16.549315882043903 0.0 27 0.0 0.0 0.0 16.97760341716348 0.0 28 0.0 0.0 0.0 17.415884328102514 0.0 29 0.0 0.0 0.0 17.886429566687223 0.0 30 0.0 0.0 0.0 18.383528632449348 0.0 31 0.0 0.0 0.0 18.8680645971813 0.0 32 0.0 0.0 0.0 19.314340208775896 0.0 33 0.0 0.0 0.0 19.749194819433974 0.0 34 0.0 0.0 0.0 20.194613855958337 0.0 35 0.0 0.0 0.0 20.657735443934307 0.0 36 0.0 0.0 0.0 21.116574156559082 0.0 37 0.0 0.0 0.0 21.562278718106853 0.0 38 0.0 0.0 0.0 22.043959432604673 0.0 39 0.0 0.0 0.0 22.514790196212797 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGTA 25 3.885232E-5 45.0 9 CGATTAC 20 7.026563E-4 45.0 12 AGGCGGT 25 3.885232E-5 45.0 3 GCGTTGG 25 3.885232E-5 45.0 2 GTAATCT 20 7.026563E-4 45.0 30 TATTGCG 35 1.2087003E-7 45.0 1 GCGATAT 20 7.026563E-4 45.0 9 TAGTGCG 20 7.026563E-4 45.0 1 CGTTTTT 955 0.0 40.052357 1 AATAGCG 45 1.9217623E-8 40.000004 1 CGTTTGG 45 1.9217623E-8 40.000004 2 CGAGGGC 85 0.0 39.705883 4 AATACGG 40 3.4490404E-7 39.375 2 ACGACAG 40 3.4490404E-7 39.375 1 CGAAAGG 35 6.235856E-6 38.571426 2 ATAGCGG 70 0.0 38.571426 2 TAAGTAG 35 6.235856E-6 38.571426 1 TAGCATA 35 6.235856E-6 38.571426 30 CGCACGG 35 6.235856E-6 38.571426 2 GCGTATG 35 6.235856E-6 38.571426 1 >>END_MODULE