##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551756_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 743255 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.08397925341908 31.0 30.0 33.0 28.0 34.0 2 30.93993582283335 31.0 30.0 34.0 28.0 34.0 3 30.837211993192106 31.0 30.0 34.0 27.0 34.0 4 34.81512805161082 35.0 35.0 37.0 32.0 37.0 5 34.497074355369286 35.0 35.0 37.0 32.0 37.0 6 34.642134933501964 35.0 35.0 37.0 32.0 37.0 7 35.13642827831632 35.0 35.0 37.0 32.0 37.0 8 34.53501960968981 35.0 35.0 37.0 31.0 37.0 9 36.25681630126942 39.0 35.0 39.0 32.0 39.0 10 35.9962543137954 37.0 35.0 39.0 32.0 39.0 11 36.382736745800564 37.0 35.0 39.0 32.0 39.0 12 36.49842247949896 38.0 35.0 39.0 32.0 39.0 13 36.42676335847051 39.0 35.0 39.0 32.0 39.0 14 37.43097591001742 39.0 36.0 41.0 32.0 41.0 15 37.34882375496969 39.0 36.0 41.0 31.0 41.0 16 37.66424578374851 39.0 36.0 41.0 33.0 41.0 17 37.27201431540992 39.0 36.0 41.0 31.0 41.0 18 37.27828537984944 39.0 36.0 40.0 32.0 41.0 19 37.22913939361323 39.0 36.0 40.0 32.0 41.0 20 36.79617358779961 39.0 35.0 40.0 30.0 41.0 21 37.029173029444806 39.0 35.0 40.0 31.0 41.0 22 37.08893448412725 39.0 35.0 40.0 31.0 41.0 23 37.01626225185165 39.0 35.0 40.0 31.0 41.0 24 36.95686002785047 39.0 35.0 41.0 31.0 41.0 25 36.84262870750953 39.0 35.0 40.0 31.0 41.0 26 36.78952983834619 39.0 35.0 40.0 31.0 41.0 27 36.72543205225663 39.0 35.0 40.0 31.0 41.0 28 36.54923680298148 39.0 35.0 40.0 30.0 41.0 29 36.60478570611701 39.0 35.0 40.0 30.0 41.0 30 36.29320219843795 39.0 35.0 40.0 30.0 41.0 31 36.359140537231504 39.0 35.0 40.0 30.0 41.0 32 35.984982273916756 39.0 35.0 40.0 28.0 41.0 33 35.918712958540475 39.0 35.0 41.0 27.0 41.0 34 35.60177866277388 39.0 35.0 41.0 25.0 41.0 35 35.490671438469974 39.0 35.0 41.0 25.0 41.0 36 35.40823136070393 39.0 35.0 40.0 25.0 41.0 37 35.297854706661916 39.0 35.0 41.0 23.0 41.0 38 35.115579444470605 39.0 35.0 40.0 23.0 41.0 39 35.06874222171395 39.0 35.0 40.0 23.0 41.0 40 34.94381605236426 38.0 34.0 40.0 23.0 41.0 41 34.77188986283308 38.0 34.0 40.0 22.0 41.0 42 34.828317333889444 38.0 35.0 40.0 22.0 41.0 43 34.86623298867818 38.0 35.0 40.0 22.0 41.0 44 35.16270593537884 39.0 35.0 40.0 23.0 41.0 45 35.24873966539075 39.0 35.0 40.0 23.0 41.0 46 35.11204230042179 39.0 35.0 40.0 23.0 41.0 47 34.751162117981046 38.0 34.0 40.0 22.0 41.0 48 34.819325803391834 38.0 34.0 40.0 22.0 41.0 49 34.91586467632239 38.0 35.0 40.0 23.0 41.0 50 34.7896024917424 38.0 34.0 40.0 22.0 41.0 51 33.966792016199015 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 16.0 9 29.0 10 33.0 11 23.0 12 15.0 13 27.0 14 35.0 15 56.0 16 81.0 17 171.0 18 416.0 19 1184.0 20 2964.0 21 5482.0 22 7157.0 23 8247.0 24 9317.0 25 10562.0 26 11440.0 27 11240.0 28 11101.0 29 11870.0 30 14324.0 31 18321.0 32 24324.0 33 33074.0 34 48850.0 35 53356.0 36 63460.0 37 92151.0 38 151592.0 39 152303.0 40 33.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.0261686769682 15.413552549259677 17.39618300583245 17.16409576793967 2 27.5264882173682 38.268831020309314 20.255632319997847 13.94904844232464 3 25.242211623197957 37.14189611909775 24.80158222951746 12.814310028186826 4 23.28904615508809 19.57793758535092 41.130433027695744 16.00258323186524 5 34.02587268165031 23.138626716268305 24.356109276089633 18.479391325991752 6 21.797364296237497 39.28651674055338 25.944662329886782 12.971456633322346 7 64.4007776604261 4.714532697391878 26.29985671135747 4.584832930824549 8 62.76405809580831 16.780916374595527 14.302359217226929 6.152666312369241 9 57.8372160294919 6.478395705377024 14.49717795373055 21.187210311400527 10 39.78970878097019 23.53404955230708 21.79574977632172 14.880491890401007 11 31.358551237462244 20.79420925523542 29.624018674613694 18.223220832688646 12 23.19190587348891 18.396512636981925 32.618818575051634 25.792762914477535 13 26.296224041546978 19.44487423562573 37.923189215006964 16.33571250782033 14 19.100577863586523 30.417151583238596 29.234784831585394 21.247485721589495 15 15.34264821629185 23.66052027904286 38.68053359883216 22.316297905833128 16 18.798124466031176 25.22256829755602 27.420602619558565 28.558704616854243 17 19.096407020470767 29.643123826950372 31.15404538146397 20.106423771114894 18 18.501994604812616 25.084661388083497 30.323240341470964 26.090103665632924 19 18.257798467551513 26.858346058889616 27.869304612817942 27.014550860740933 20 23.98571149874538 26.578899570134073 33.950259332261474 15.485129598859073 21 21.070695790812035 31.88717196655253 30.435987648922648 16.60614459371279 22 18.953522007924605 20.74200644462533 36.542101970387016 23.76236957706305 23 23.291737021614388 26.43466912432476 32.294972788612256 17.978621065448603 24 22.30203631324377 27.104560346045435 27.81642908557628 22.776974255134512 25 18.028402096185022 36.13389751834835 25.89447766917142 19.943222716295214 26 18.574244371043587 24.477198269772824 33.31911658851942 23.62944077066417 27 25.979509051402278 25.16942368366173 27.925005549912214 20.92606171502378 28 17.354070944695966 29.213392442701362 31.500898076703148 21.931638535899523 29 20.442782086901534 25.2719456983135 32.02238800949876 22.262884205286205 30 19.412718380636523 29.5588997046774 33.591432280980285 17.436949633705794 31 25.721993124836022 21.972001533793918 25.84671478832971 26.459290553040343 32 25.767334225804067 25.66642673106807 27.625781192188413 20.94045785093945 33 25.66844488096279 20.686305507531063 29.598320899287593 24.046928712218552 34 25.754956239783116 24.14460716712299 27.658206133830248 22.442230459263644 35 23.50364276055997 21.874188535563167 32.90795218330182 21.71421652057504 36 27.10752029922436 28.84797276843075 26.285460575441803 17.75904635690308 37 20.018836065684052 22.104526710213857 33.99196776341902 23.884669460683078 38 23.930279648303745 22.01734263476196 28.13852580877357 25.913851908160723 39 25.816038909929972 23.434487490834236 26.557238094597412 24.192235504638383 40 20.259803163113602 21.30574298188374 35.96262386394979 22.471829991052868 41 25.31311595616578 24.379519814868384 26.544591021923836 23.762773207042 42 21.22945691586333 22.155384087560797 35.5854989202898 21.029660076286067 43 26.78865261585862 23.81282332443105 26.46265413619821 22.93586992351212 44 23.331965476182468 21.396828813798763 30.923572663486958 24.347633046531808 45 21.512266987776737 20.27702470888188 28.925604267714313 29.285104035627075 46 27.90764946081762 24.87154475920108 26.48068294192437 20.740122838056926 47 17.949559706964635 24.07410646413411 37.86789190789164 20.10844192100961 48 22.92429919744906 24.718703540507633 27.91774021029122 24.43925705175209 49 20.9583521133393 20.19966229625095 36.74902960625895 22.092955984150798 50 22.863485613954833 21.289194152747037 31.66356095821757 24.183759275080558 51 20.61715023780533 21.117785955022168 29.329099703331966 28.93596410384054 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 134.0 1 445.5 2 757.0 3 5423.5 4 10090.0 5 6898.0 6 3706.0 7 3623.0 8 3540.0 9 3512.5 10 3485.0 11 3349.5 12 3214.0 13 3105.5 14 2997.0 15 2841.5 16 2686.0 17 2552.0 18 2418.0 19 2387.0 20 2356.0 21 2422.5 22 2489.0 23 2735.0 24 2981.0 25 3650.5 26 4996.0 27 5672.0 28 6931.0 29 8190.0 30 9733.0 31 11276.0 32 12906.5 33 14537.0 34 16778.5 35 19020.0 36 20626.0 37 22232.0 38 23731.5 39 25231.0 40 27141.0 41 29051.0 42 30840.5 43 32630.0 44 36635.0 45 40640.0 46 90620.0 47 140600.0 48 103264.5 49 65929.0 50 64215.0 51 62501.0 52 54172.0 53 45843.0 54 42607.0 55 39371.0 56 36985.5 57 34600.0 58 31621.0 59 28642.0 60 25212.0 61 21782.0 62 18748.0 63 15714.0 64 13832.0 65 11950.0 66 9706.0 67 7462.0 68 6456.0 69 5450.0 70 4525.0 71 3600.0 72 3108.5 73 2617.0 74 2064.0 75 1215.0 76 919.0 77 802.0 78 685.0 79 470.5 80 256.0 81 174.0 82 92.0 83 69.0 84 46.0 85 33.5 86 21.0 87 14.5 88 8.0 89 4.5 90 1.0 91 2.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 743255.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.37594539158392 #Duplication Level Percentage of deduplicated Percentage of total 1 73.5651177612876 25.288704708874626 2 8.48661072156088 5.834705334480147 3 3.6210458305216875 3.7343062119130845 4 2.3632895454195193 3.249612494313703 5 1.8113031171314082 3.1132628521057515 6 1.4788697016067538 3.0502526462221065 7 1.2638470757254123 3.041215664091486 8 1.0738743585917274 2.953235704669714 9 0.921873161592527 2.852123531478437 >10 5.323057124264392 27.73691947350781 >50 0.051893999731648606 1.254180747505576 >100 0.030502579773931445 2.085807427198988 >500 0.003169099197291578 0.7540063801267085 >1k 0.003169099197291578 3.1182936786204625 >5k 0.0011884121989843416 2.776219626448114 >10k+ 0.0011884121989843416 9.157153518443293 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC 26698 3.5920377259486984 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC 20428 2.7484510699558027 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG 20119 2.7068771821245736 No Hit GAACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT 7956 1.070426704159407 No Hit GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 6611 0.889465930266194 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5820 0.7830421591513007 No Hit GAATGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT 4715 0.6343717835736052 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCTGTGT 4270 0.5745000033635831 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTC 3791 0.5100537500588628 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTA 3717 0.5000975439115781 No Hit GAATGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT 2865 0.38546662989149083 No Hit CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT 1193 0.16051018829338518 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATG 1190 0.1601065583144412 No Hit CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 1158 0.1558011718723722 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGT 888 0.11947447376741496 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTAT 869 0.11691815056743649 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCATGCTGTG 762 0.10252201465176825 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCC 757 0.10184929802019495 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16468103140913953 0.0 2 0.0 0.0 0.0 1.3492004762833751 0.0 3 0.0 0.0 0.0 1.6149235457548217 0.0 4 0.0 0.0 0.0 2.9960107903747706 0.0 5 0.0 0.0 0.0 7.39826842739033 0.0 6 0.0 0.0 0.0 8.425103093823788 0.0 7 0.0 0.0 0.0 9.60921890871908 0.0 8 0.0 0.0 0.0 10.787280273930213 0.0 9 0.0 0.0 0.0 11.123100416411594 0.0 10 0.0 0.0 0.0 14.50350149006734 0.0 11 0.0 0.0014799765894612212 0.0 15.332153836839309 0.0 12 1.3454332631465646E-4 0.0014799765894612212 0.0 18.92513336607221 0.0 13 1.3454332631465646E-4 0.0014799765894612212 0.0 19.379217092384174 0.0 14 1.3454332631465646E-4 0.0014799765894612212 0.0 19.660547187708122 0.0 15 1.3454332631465646E-4 0.0014799765894612212 0.0 20.397171899280867 0.0 16 1.3454332631465646E-4 0.0014799765894612212 0.0 20.88072061405574 0.0 17 1.3454332631465646E-4 0.0014799765894612212 0.0 21.383374481167298 0.0 18 1.3454332631465646E-4 0.0014799765894612212 0.0 21.825752938089888 0.0 19 1.3454332631465646E-4 0.0014799765894612212 0.0 22.82756254582882 0.0 20 1.3454332631465646E-4 0.0014799765894612212 0.0 23.27047917605667 0.0 21 1.3454332631465646E-4 0.0014799765894612212 0.0 23.673974611674325 0.0 22 1.3454332631465646E-4 0.0014799765894612212 0.0 24.192908221269956 0.0 23 1.3454332631465646E-4 0.0014799765894612212 0.0 24.594923680298148 0.0 24 1.3454332631465646E-4 0.0014799765894612212 0.0 24.928591129558495 0.0 25 1.3454332631465646E-4 0.0014799765894612212 0.0 25.234273566945397 0.0 26 1.3454332631465646E-4 0.0014799765894612212 0.0 25.533901554648136 0.0 27 1.3454332631465646E-4 0.0014799765894612212 0.0 25.921117247781716 0.0 28 1.3454332631465646E-4 0.0014799765894612212 0.0 26.212941722558206 0.0 29 1.3454332631465646E-4 0.0014799765894612212 0.0 26.529253082723965 0.0 30 1.3454332631465646E-4 0.0014799765894612212 0.0 26.89870905678401 0.0 31 1.3454332631465646E-4 0.0014799765894612212 0.0 27.230223812823326 0.0 32 1.3454332631465646E-4 0.0014799765894612212 0.0 27.557971355725826 0.0 33 1.3454332631465646E-4 0.0014799765894612212 0.0 27.879933535596802 0.0 34 1.3454332631465646E-4 0.0014799765894612212 0.0 28.21360098485715 0.0 35 2.6908665262931293E-4 0.0014799765894612212 0.0 28.560453680096334 0.0 36 2.6908665262931293E-4 0.0014799765894612212 0.0 28.8759577803042 0.0 37 2.6908665262931293E-4 0.0014799765894612212 0.0 29.213257899375048 0.0 38 2.6908665262931293E-4 0.0014799765894612212 0.0 29.579619376929855 0.0 39 2.6908665262931293E-4 0.0014799765894612212 0.0 30.09290216682027 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 30 2.1644628E-6 45.000004 1 GCGACGA 20 7.031675E-4 45.000004 33 TACGCTT 20 7.031675E-4 45.000004 29 TTACGCG 20 7.031675E-4 45.000004 1 GACGATT 20 7.031675E-4 45.000004 27 CCGCAAT 20 7.031675E-4 45.000004 42 CGCGCAT 90 0.0 45.0 41 TCGATAG 25 3.889471E-5 45.0 1 CCGCGTA 105 0.0 45.0 40 CGGTCGA 165 0.0 45.0 41 CCCGGTC 105 0.0 45.0 39 GCGAACC 135 0.0 43.333332 33 CCGATGA 3115 0.0 43.12199 18 GATACCT 2380 0.0 43.014706 5 CCCGTCG 225 0.0 43.0 40 CGATGAA 3185 0.0 42.88069 19 ACGGCTG 2135 0.0 42.786884 8 GATGAAT 3405 0.0 42.753304 20 CGTTTTT 3390 0.0 42.67699 1 ACGGCTA 95 0.0 42.63158 30 >>END_MODULE