SRR3551753_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551753_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	987338
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG	20640	2.09046952512716	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC	19880	2.013494872070152	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC	19851	2.0105576813613983	No Hit
GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	6300	0.6380793608673018	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCT	4254	0.4308554922427781	No Hit
GAACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT	4018	0.4069528368198125	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3960	0.401078455402304	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTATGCT	3871	0.3920643183995754	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTC	3118	0.31579864241019795	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTATGCTCGTA	2990	0.30283449031638604	No Hit
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1878	0.19020841900139568	Illumina Single End Adapter 2 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTT	1202	0.12174149075595186	No Hit
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	1195	0.12103251368832152	Illumina Single End Adapter 2 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCGA	50	2.1827873E-11	45.0	41
ACGATCG	30	2.1651904E-6	44.999996	40
ACGTAAG	30	2.1651904E-6	44.999996	1
TCGAATG	510	0.0	42.794117	44
CGATGAA	2960	0.0	42.491554	19
TACGGCT	2295	0.0	42.450977	7
CTCGAAT	545	0.0	42.110092	43
TACGCTC	155	0.0	42.096775	39
CCGATGA	3010	0.0	42.084717	18
CGTTTTT	2465	0.0	41.713997	1
GCTCGAA	530	0.0	41.603775	42
CGAATGC	500	0.0	41.4	45
ACGCTCG	360	0.0	41.250004	40
ATGAATG	3280	0.0	41.227135	21
TGATACC	2230	0.0	41.06502	4
GATACCT	2230	0.0	41.06502	5
CGCTCGA	540	0.0	40.833332	41
GATGAAT	3330	0.0	40.743244	20
ACGGCTG	2400	0.0	40.6875	8
TGAATGA	3305	0.0	40.43873	22